Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7808

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7807: 16175 - K01304 pcp pyroglutamyl-peptidase, at 1116309 to 1117210 16175 mRNA_7808: 16176 - K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39, at 1117423 to 1121551 16176 mRNA_7809: 16177 - Hypothetical Protein, at 1121934 to 1122810 16177

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,116,462 - 16175 mRNA_7807 0.17 0.9
1,116,512 - 16175 mRNA_7807 0.23 0.4
1,116,686 - 16175 mRNA_7807 0.42 0.4
1,116,847 + 16175 mRNA_7807 0.60 2.1
1,117,090 + 16175 mRNA_7807 0.87 0.8
1,117,132 + 0.5
1,117,237 - 0.0
1,117,248 + 0.5
1,117,251 - 2.2
1,117,272 + 0.3
1,117,273 + -0.9
1,117,277 + 0.5
1,117,413 - 0.5
1,118,287 - 16176 mRNA_7808 0.21 -1.2
1,118,565 + 16176 mRNA_7808 0.28 -0.7
1,118,589 + 16176 mRNA_7808 0.28 -1.3
1,120,317 - 16176 mRNA_7808 0.70 -1.0
1,121,241 + 1.1
1,121,394 + 0.1
1,121,413 - 0.4
1,121,556 + -0.4
1,121,578 - 0.1
1,121,594 + -0.1
1,121,720 - 1.7
1,121,725 + -0.6
1,121,737 - -0.3
1,121,854 + 0.0
1,121,981 - 0.7
1,122,170 - 16177 mRNA_7809 0.27 0.5
1,122,171 + 16177 mRNA_7809 0.27 -0.9
1,122,200 + 16177 mRNA_7809 0.30 0.1
1,122,262 - 16177 mRNA_7809 0.37 0.2
1,122,265 - 16177 mRNA_7809 0.38 -0.3
1,122,280 - 16177 mRNA_7809 0.39 -0.0
1,122,299 + 16177 mRNA_7809 0.42 0.2
1,122,310 - 16177 mRNA_7809 0.43 -0.0
1,122,315 + 16177 mRNA_7809 0.43 1.2
1,122,323 + 16177 mRNA_7809 0.44 0.6
1,122,349 - 16177 mRNA_7809 0.47 0.4
1,122,368 - 16177 mRNA_7809 0.49 1.0
1,122,377 + 16177 mRNA_7809 0.51 -1.6
1,122,392 + 16177 mRNA_7809 0.52 0.4
1,122,402 + 16177 mRNA_7809 0.53 1.6
1,122,418 + 16177 mRNA_7809 0.55 0.1
1,122,418 - 16177 mRNA_7809 0.55 0.9
1,122,420 - 16177 mRNA_7809 0.55 0.5
1,122,429 - 16177 mRNA_7809 0.56 1.0
1,122,443 + 16177 mRNA_7809 0.58 1.1
1,122,444 - 16177 mRNA_7809 0.58 -0.3
1,122,449 + 16177 mRNA_7809 0.59 0.3
1,122,453 - 16177 mRNA_7809 0.59 0.6
1,122,460 + 16177 mRNA_7809 0.60 1.4
1,122,460 + 16177 mRNA_7809 0.60 0.1
1,122,487 - 16177 mRNA_7809 0.63 0.6
1,122,508 - 16177 mRNA_7809 0.65 0.3
1,122,510 - 16177 mRNA_7809 0.66 -0.0
1,122,527 - 16177 mRNA_7809 0.68 0.6
1,122,530 - 16177 mRNA_7809 0.68 -0.4
1,122,532 + 16177 mRNA_7809 0.68 0.4
1,122,535 + 16177 mRNA_7809 0.69 0.0
1,122,545 + 16177 mRNA_7809 0.70 0.5