Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7600

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7599: 15967 - K01900 LSC2 succinyl-CoA synthetase beta subunit, at 652530 to 654489 15967 mRNA_7600: 15968 - K00010 iolG myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase, at 654790 to 656500 15968 mRNA_7601: 15969 - K09521 DNAJC1 DnaJ homolog subfamily C member 1, at 656888 to 658260 15969

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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654,553 + 0.5
654,662 - 0.6
654,812 - -0.5
654,818 - 0.3
654,818 - -0.1
654,884 - 0.9
654,993 - 15968 mRNA_7600 0.12 0.3
655,126 + 15968 mRNA_7600 0.20 0.4
655,266 + 15968 mRNA_7600 0.28 -1.4
655,415 - 15968 mRNA_7600 0.37 0.7
655,582 - 15968 mRNA_7600 0.46 1.5
655,690 + 15968 mRNA_7600 0.53 1.2
656,009 + 15968 mRNA_7600 0.71 0.3
656,036 - 15968 mRNA_7600 0.73 0.0
656,130 - 15968 mRNA_7600 0.78 0.1
656,133 + 15968 mRNA_7600 0.78 1.0
656,173 - 15968 mRNA_7600 0.81 0.1
656,443 - -0.9
656,550 + 1.9
656,578 - 0.1
656,583 + 0.6
656,586 - 0.4
656,587 - 1.2
656,589 + 0.1
656,589 - 0.4
656,591 + 0.8
656,596 + 0.8
656,596 + 0.7
656,596 + 0.3
656,627 - 0.1
656,691 - -0.0
656,851 + 0.9
656,873 + -0.7
656,888 + 0.4
657,003 - -1.0
657,032 + 15969 mRNA_7601 0.10 -0.8
657,118 - 15969 mRNA_7601 0.17 0.0
657,296 + 15969 mRNA_7601 0.30 -0.3
657,299 + 15969 mRNA_7601 0.30 0.4
657,476 - 15969 mRNA_7601 0.43 -0.2