Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7585

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7584: 15952 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 617839 to 618826 15952 mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619020 to 621044 15953 mRNA_7586: 15954 - HMMPfam-Cytochrome oxidase c assembly-PF14880, at 621173 to 621587 15954 mRNA_7587: 15955 - HMMPfam-Protein of unknown function (DUF2413)-PF10310, at 621699 to 623748 15955

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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618,089 - 15952 mRNA_7584 0.25 0.8
618,239 - 15952 mRNA_7584 0.40 -0.4
618,689 - 15952 mRNA_7584 0.86 1.3
618,698 + 15952 mRNA_7584 0.87 0.8
618,814 + -0.5
618,825 + 0.6
618,843 - 0.5
618,960 - 0.4
618,969 - 1.1
618,971 - 0.8
618,974 + 0.4
619,683 - 15953 mRNA_7585 0.33 -0.1
619,717 - 15953 mRNA_7585 0.34 1.6
619,718 - 15953 mRNA_7585 0.34 0.5
619,913 - 15953 mRNA_7585 0.44 1.1
620,297 - 15953 mRNA_7585 0.63 0.7
620,437 - 15953 mRNA_7585 0.70 -0.0
620,496 - 15953 mRNA_7585 0.73 -0.5
620,731 - 15953 mRNA_7585 0.84 -0.3
620,911 - -1.2
620,932 - 0.0
620,933 - 0.8
620,992 + 0.5
621,040 + -0.3
621,331 + 15954 mRNA_7586 0.38 0.1
621,350 - 15954 mRNA_7586 0.43 -1.0
621,517 + 15954 mRNA_7586 0.83 0.1
621,596 - -0.4
621,600 - 0.9
621,605 + 0.2
621,639 - 0.5
621,640 + 1.2
621,772 - -0.7
621,774 + 0.9
621,788 - 0.2
621,789 + 2.0
621,796 - 0.1
621,960 + 15955 mRNA_7587 0.13 0.4