Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7551

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7550: 15918 - ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SUPERFAMILY--SSF54427, at 541914 to 542318 15918 mRNA_7551: 15919 - KOG1032 Uncharacterized conserved protein, contains GRAM domain, at 542848 to 546528 15919 mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546828 to 547296 15920

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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542,784 - -0.4
542,795 - -0.1
542,799 + 0.9
542,930 - -0.1
542,947 + 0.2
542,950 + -0.0
542,958 - -0.2
543,214 + -0.0
543,217 - 15919 mRNA_7551 0.10 0.1
543,248 - 15919 mRNA_7551 0.11 -0.6
543,392 - 15919 mRNA_7551 0.15 -0.0
543,409 - 15919 mRNA_7551 0.15 0.2
543,688 + 15919 mRNA_7551 0.23 -1.4
543,959 + 15919 mRNA_7551 0.30 0.4
543,960 - 15919 mRNA_7551 0.30 -0.4
543,981 - 15919 mRNA_7551 0.31 -0.0
543,997 + 15919 mRNA_7551 0.31 -0.1
544,132 - 15919 mRNA_7551 0.35 0.2
544,133 + 15919 mRNA_7551 0.35 0.7
544,145 + 15919 mRNA_7551 0.35 -0.6
544,259 - 15919 mRNA_7551 0.38 -0.7
545,303 + 15919 mRNA_7551 0.67 0.3
546,002 - 15919 mRNA_7551 0.86 0.5
546,120 - 15919 mRNA_7551 0.89 0.5
546,135 - 15919 mRNA_7551 0.89 -0.4
546,148 + 15919 mRNA_7551 0.90 0.4
546,238 + 0.2
546,282 + 0.0
546,741 + 0.7
546,868 - 1.0
546,877 - 15920 mRNA_7552 0.10 0.7
547,464 - 2.7