Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7548

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7547: 15915 - Hypothetical Protein, at 534942 to 536762 15915 mRNA_7548: 15916 - K08023 LTBP2_3_4 latent transforming growth factor beta binding protein 2/3/4, at 537029 to 539584 15916

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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536,312 + 15915 mRNA_7547 0.75 -0.0
536,336 - 15915 mRNA_7547 0.77 0.3
536,342 + 15915 mRNA_7547 0.77 1.4
536,434 - 15915 mRNA_7547 0.82 -0.0
536,712 - 1.4
536,784 - 0.6
536,793 + 1.1
536,885 - 0.5
536,930 + 0.2
537,063 + 0.1
537,338 - 15916 mRNA_7548 0.12 0.9
537,378 + 15916 mRNA_7548 0.14 1.0
537,470 + 15916 mRNA_7548 0.17 0.6
537,957 + 15916 mRNA_7548 0.36 0.1
538,048 - 15916 mRNA_7548 0.40 0.4
538,178 - 15916 mRNA_7548 0.45 0.1
538,196 + 15916 mRNA_7548 0.46 -0.0
538,345 - 15916 mRNA_7548 0.51 0.2
538,638 - 15916 mRNA_7548 0.63 1.3
538,883 - 15916 mRNA_7548 0.73 -0.3
539,056 + 15916 mRNA_7548 0.79 -0.5
539,103 - 15916 mRNA_7548 0.81 1.1
539,109 - 15916 mRNA_7548 0.81 0.6
539,216 + 15916 mRNA_7548 0.86 -0.4
539,243 + 15916 mRNA_7548 0.87 0.4
539,350 + 0.4
539,387 + 1.3
539,545 - 0.5
539,557 + 1.0
539,642 - -0.5
539,644 - 0.5
539,654 - 0.3
539,659 - 0.1
539,661 - 0.3
539,677 + -0.1
539,696 - 0.5
539,762 - 0.5
539,772 - 0.5
539,774 - 0.1
539,782 - 1.8
539,788 + 1.5
539,796 - -0.7
539,802 - -0.5
539,802 - 0.0
539,803 - -0.1
539,803 - 0.5
539,806 + -0.1
539,815 + 0.4
539,821 - 0.3
539,821 + 0.5
539,823 + 0.1
539,826 - -0.2
539,828 - -0.0
539,833 + 0.8
539,839 + 1.2
539,839 - -0.5
539,848 - 0.1
539,849 - 0.1
539,849 - 0.8
539,850 - 1.0
539,850 + -0.4
539,851 - -0.3
539,852 - 0.4
539,865 + -0.5
539,872 + 1.1
539,874 - 0.3
539,876 + -0.4
539,877 - 0.4
539,898 + 0.7
539,963 - 2.1
539,966 - 0.8
539,971 - 0.1
539,981 + 1.1
539,994 + 0.0
539,998 - 0.3
539,999 - 0.4
540,000 - -0.0
540,003 - 0.6
540,004 + 0.7
540,004 + -1.0
540,005 - 0.6
540,006 - -0.6
540,006 + -0.1
540,006 + 1.3
540,006 + 1.4
540,008 + 0.3
540,012 + 0.3
540,015 - -0.2
540,016 + 0.5
540,016 + 0.2
540,016 + -0.5
540,022 + 1.0
540,023 + 0.1
540,027 + 0.3
540,027 + -0.8
540,028 - 0.0
540,029 + 0.1
540,038 + 0.4
540,060 - -0.4
540,061 - -0.5
540,061 - 0.3
540,063 + -0.1
540,068 - -0.8
540,072 - 0.2
540,076 + 0.2
540,081 - 0.4
540,084 + 0.7
540,085 - -0.0
540,092 - 1.8
540,094 - 0.2
540,098 - 0.7
540,102 + 0.6
540,109 + -0.0
540,118 + 0.5
540,150 - 0.1
540,152 + -0.1
540,154 - 0.9
540,156 - -0.7
540,157 - 0.4
540,158 - -0.5
540,160 + 1.4
540,160 + 0.1
540,160 + -1.2
540,161 - -0.1
540,163 + 0.5
540,168 - -0.5
540,169 - 0.7
540,173 - -0.1
540,173 - -0.9
540,173 - 0.1
540,174 - 0.4
540,178 + 0.3
540,178 + 0.5
540,179 - 1.0
540,180 + -0.3
540,194 + 1.5
540,194 + -0.1
540,200 - 0.1
540,210 + -0.1
540,217 + 0.4
540,234 + -0.2
540,236 + 0.3
540,239 - 0.4
540,246 - 0.9
540,248 + 0.2
540,251 - 0.3
540,252 + -0.8
540,256 - 0.2
540,264 + 0.9
540,266 - 0.7
540,269 - 0.7
540,270 + -0.0
540,274 - -0.4
540,283 - 0.2
540,286 + -0.2
540,288 + -0.2
540,289 + -0.1
540,295 - 0.8
540,297 - -1.7
540,390 + 1.1
540,406 - -0.7
540,411 - 1.1
540,432 + 0.2
540,441 + 1.2
540,446 - 0.2
540,448 - -0.1
540,451 + 0.6
540,565 - -0.1
540,576 - 0.2