Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7522

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7522: 15890 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SMART-helix loop helix domain-SM00353,SUPERFAMILY--SSF47459, at 490428 to 491714 15890 mRNA_7523: 15891 - KOG0143 Iron/ascorbate family oxidoreductases, at 492081 to 493296 15891

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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489,444 - -0.2
489,447 + -0.0
489,478 - -0.4
489,527 + -0.1
489,532 + 0.8
489,547 - -0.0
489,570 + 0.1
489,570 + 0.3
489,590 - 1.1
489,602 + 0.4
489,615 - 0.9
489,615 - 0.1
489,617 + -0.3
489,618 + 0.2
489,619 + 1.2
489,622 - 0.1
489,625 - -0.1
489,626 - 0.3
489,630 - 0.4
489,631 - 0.7
489,640 - 0.4
489,641 + 0.2
489,642 + 0.1
489,646 + 0.3
489,647 + -0.7
489,653 - -0.6
489,653 - 0.3
489,654 + 0.6
489,660 + 0.2
489,663 + -0.0
489,664 + 1.0
489,664 + -1.7
489,665 - -0.7
489,665 - 1.0
489,666 - 0.7
489,668 - 0.2
489,670 - 1.0
489,673 + -0.1
489,684 + 1.0
489,686 + 1.1
489,805 + 0.6
489,805 - 1.5
489,807 - 0.8
489,808 + 0.5
489,825 - 0.5
489,833 - 0.6
489,836 - 0.5
489,847 - 1.0
489,851 + 0.4
489,936 - 0.1
489,965 - 0.3
489,975 - -0.3
489,985 - 0.2
489,985 + 0.5
489,992 + 0.4
490,001 + 0.5
490,038 + -0.1
490,086 - 0.2
490,104 + -0.9
490,104 + 0.5
490,107 - 0.3
490,113 + 0.4
490,117 - 0.5
490,124 + 0.3
490,128 + 0.6
490,132 + 0.4
490,132 - 0.2
490,140 + 0.2
490,145 - 0.1
490,146 + 0.9
490,152 - 0.3
490,169 + 0.4
490,172 + 0.1
490,180 - 0.5
490,190 - 0.3
490,193 + 0.7
490,207 + 0.2
490,419 - 0.7
490,476 + 0.5
490,503 - 1.1
490,622 - 15890 mRNA_7522 0.15 1.2
490,740 - 15890 mRNA_7522 0.24 1.0
490,750 + 15890 mRNA_7522 0.25 1.2
490,751 - 15890 mRNA_7522 0.25 0.2
490,771 - 15890 mRNA_7522 0.27 -0.0
490,778 + 15890 mRNA_7522 0.27 -0.0
491,085 - 15890 mRNA_7522 0.51 -0.8
491,425 - 15890 mRNA_7522 0.77 0.6
491,543 - 15890 mRNA_7522 0.87 -0.1
491,573 + 15890 mRNA_7522 0.89 0.2
491,646 - -0.0
491,647 + 0.2
491,760 - -0.3
491,849 - -0.0
491,986 + 0.1
492,005 - -1.7
492,044 + 0.2
492,053 + 1.9
492,063 + 0.3
492,303 - 15891 mRNA_7523 0.18 0.2
492,418 + 15891 mRNA_7523 0.28 0.4
492,452 - 15891 mRNA_7523 0.31 1.4