Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7514

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7513: 15881 - KOG3267 Uncharacterized conserved protein, at 470046 to 470823 15881 mRNA_7514: 15882 - K11757 PBRM1, PB1 protein polybromo-1, at 471027 to 473637 15882 mRNA_7515: 15883 - K07827 KRAS, KRAS2 GTPase KRas, at 473987 to 475256 15883

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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470,114 + -0.3
470,142 + 15881 mRNA_7513 0.12 -0.4
470,150 - 15881 mRNA_7513 0.13 0.2
470,170 - 15881 mRNA_7513 0.16 0.7
470,319 + 15881 mRNA_7513 0.35 -0.5
470,457 + 15881 mRNA_7513 0.53 0.0
470,717 - 15881 mRNA_7513 0.86 0.5
471,032 + 0.7
471,598 + 15882 mRNA_7514 0.22 0.3
471,619 - 15882 mRNA_7514 0.23 -0.1
471,752 - 15882 mRNA_7514 0.28 0.3
471,892 - 15882 mRNA_7514 0.33 1.1
472,062 + 15882 mRNA_7514 0.40 2.3
472,078 - 15882 mRNA_7514 0.40 0.5
472,205 - 15882 mRNA_7514 0.45 -0.6
472,208 - 15882 mRNA_7514 0.45 0.4
472,209 + 15882 mRNA_7514 0.45 1.2
472,616 - 15882 mRNA_7514 0.61 0.3
472,799 - 15882 mRNA_7514 0.68 -1.1
472,927 + 15882 mRNA_7514 0.73 0.6
472,930 - 15882 mRNA_7514 0.73 1.4
473,232 - 15882 mRNA_7514 0.84 0.2
473,232 - 15882 mRNA_7514 0.84 0.7
473,283 - 15882 mRNA_7514 0.86 0.2
473,371 - 15882 mRNA_7514 0.90 -0.2
473,380 + 1.2
473,380 + 0.6
473,402 + -0.7
473,403 + 0.1
473,405 + 0.1
473,663 - 0.4
473,669 + 2.2
473,673 - 0.8
473,679 - 0.8
473,758 + 0.3
473,856 - 0.3
473,907 - -1.0
474,014 + 0.5
474,017 + -0.1
474,151 - 15883 mRNA_7515 0.13 0.5
474,161 + 15883 mRNA_7515 0.14 0.2
474,172 - 15883 mRNA_7515 0.15 0.2
474,420 - 15883 mRNA_7515 0.34 0.3
474,497 + 15883 mRNA_7515 0.40 -0.0
474,498 + 15883 mRNA_7515 0.40 0.2
474,590 + 15883 mRNA_7515 0.47 -0.1
474,617 - 15883 mRNA_7515 0.50 -0.8
474,632 - 15883 mRNA_7515 0.51 0.9