Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7400

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7399: 15767 - K12859 TXNL4A, DIB1 U5 snRNP protein, DIM1 family, at 186172 to 187240 15767 mRNA_7400: 15768 - K08075 E3.1.3.32 polynucleotide 3'-phosphatase, at 187404 to 189530 15768 mRNA_7401: 15769 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 190009 to 193201 15769

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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187,662 - 15768 mRNA_7400 0.12 0.9
188,255 - 15768 mRNA_7400 0.40 -0.6
188,266 + 15768 mRNA_7400 0.41 0.4
188,651 + 15768 mRNA_7400 0.59 0.3
189,412 - -1.8
189,450 + -0.1
189,615 - 0.8
189,754 + -0.6
189,857 + 0.3
189,860 - 1.2
189,860 - 0.2
189,862 + -0.2
189,864 + 0.0
189,865 - 0.0
189,866 - 1.6
189,871 - -0.3
189,872 + -0.6
189,876 - 1.0
189,877 - 0.2
189,882 + -0.2
189,883 + 0.2
189,883 + 0.3
190,002 - 1.2
190,028 - -0.2
190,032 + 0.3
190,190 + 0.1
190,309 - 0.1
190,323 + -0.9