Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7254

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7253: 15621 - KOG2497 Predicted methyltransferase, at 1224548 to 1225738 15621 mRNA_7254: 15622 - Hypothetical Protein, at 1226042 to 1227561 15622 mRNA_7255: 15623 - Hypothetical Protein, at 1227615 to 1231158 15623

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,225,069 + 15621 mRNA_7253 0.44 1.6
1,225,374 + 15621 mRNA_7253 0.69 0.2
1,225,379 - 15621 mRNA_7253 0.70 0.8
1,225,383 + 15621 mRNA_7253 0.70 -0.3
1,225,677 + -0.5
1,225,760 + 0.4
1,225,834 + -0.3
1,225,841 + 0.2
1,225,883 + -0.7
1,225,913 - -0.6
1,225,932 - 1.0
1,226,078 + 0.3
1,226,111 - 0.2
1,226,112 - 0.5
1,226,250 + 15622 mRNA_7254 0.14 -0.1
1,226,350 + 15622 mRNA_7254 0.20 0.4
1,226,382 - 15622 mRNA_7254 0.22 0.0
1,226,388 + 15622 mRNA_7254 0.23 0.7
1,226,388 + 15622 mRNA_7254 0.23 -0.2
1,226,396 + 15622 mRNA_7254 0.23 -0.2
1,226,491 - 15622 mRNA_7254 0.30 -0.2
1,226,634 - 15622 mRNA_7254 0.39 0.2
1,226,711 + 15622 mRNA_7254 0.44 0.1
1,226,737 + 15622 mRNA_7254 0.46 0.1
1,226,974 + 15622 mRNA_7254 0.61 -0.1
1,227,028 - 15622 mRNA_7254 0.65 0.8
1,227,122 + 15622 mRNA_7254 0.71 1.6
1,227,214 + 15622 mRNA_7254 0.77 1.0
1,227,393 - 15622 mRNA_7254 0.89 1.0
1,227,524 - -0.2
1,227,541 + 0.7
1,227,561 + -0.0
1,227,566 - -0.5
1,227,698 - 1.5
1,227,699 - 0.5
1,227,701 - 1.4
1,227,709 - -0.0
1,227,709 - 0.1
1,227,710 - -0.2
1,227,715 + 1.0
1,227,715 + 1.2
1,227,718 + -1.5
1,227,814 - 1.1
1,227,844 - 2.1
1,227,854 - -0.0
1,228,043 + 15623 mRNA_7255 0.12 0.5
1,228,044 - 15623 mRNA_7255 0.12 -0.3
1,228,044 - 15623 mRNA_7255 0.12 0.7
1,228,048 - 15623 mRNA_7255 0.12 -0.8
1,228,048 + 15623 mRNA_7255 0.12 0.0
1,228,054 + 15623 mRNA_7255 0.12 0.5
1,228,167 + 15623 mRNA_7255 0.16 0.7
1,228,551 - 15623 mRNA_7255 0.26 0.2