Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7216

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7215: 15583 - K10253 K10253 DOPA 4,5-dioxygenase, at 1149235 to 1150219 15583 mRNA_7216: 15584 - K01535 PMA1, PMA2 H+-transporting ATPase, at 1150429 to 1154847 15584 mRNA_7217: 15585 - KOG3309 Ferredoxin, at 1155397 to 1156419 15585

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,149,436 - 15583 mRNA_7215 0.20 0.2
1,149,461 - 15583 mRNA_7215 0.23 -0.4
1,149,480 + 15583 mRNA_7215 0.25 -0.3
1,149,592 + 15583 mRNA_7215 0.36 0.4
1,149,743 + 15583 mRNA_7215 0.52 -0.1
1,149,876 + 15583 mRNA_7215 0.65 1.1
1,150,609 - 1.0
1,150,640 + 0.7
1,150,902 + 15584 mRNA_7216 0.11 -0.2
1,151,485 - 15584 mRNA_7216 0.24 0.6
1,151,515 + 15584 mRNA_7216 0.25 0.4
1,151,780 + 15584 mRNA_7216 0.31 0.2
1,151,786 + 15584 mRNA_7216 0.31 -0.8
1,151,801 + 15584 mRNA_7216 0.31 -0.8
1,151,925 - 15584 mRNA_7216 0.34 0.9
1,151,931 - 15584 mRNA_7216 0.34 0.1
1,152,208 - 15584 mRNA_7216 0.40 1.3
1,152,222 - 15584 mRNA_7216 0.41 0.8
1,152,225 + 15584 mRNA_7216 0.41 -0.2
1,152,354 + 15584 mRNA_7216 0.44 0.5
1,152,483 - 15584 mRNA_7216 0.46 0.3
1,152,788 + 15584 mRNA_7216 0.53 0.6
1,153,134 + 15584 mRNA_7216 0.61 -0.6
1,153,183 - 15584 mRNA_7216 0.62 0.8
1,153,363 - 15584 mRNA_7216 0.66 1.6
1,153,406 - 15584 mRNA_7216 0.67 -0.3
1,153,822 + 15584 mRNA_7216 0.77 0.9
1,153,931 - 15584 mRNA_7216 0.79 -0.2
1,153,962 + 15584 mRNA_7216 0.80 0.9
1,154,091 + 15584 mRNA_7216 0.83 0.2
1,154,233 - 15584 mRNA_7216 0.86 1.1
1,154,292 - 15584 mRNA_7216 0.87 0.1
1,154,560 + 0.1
1,154,662 - -0.6
1,154,691 - -0.6
1,154,992 + -0.1
1,155,000 - 0.4
1,155,001 + 1.5
1,155,020 - 0.8
1,155,050 - 0.6
1,155,083 + -0.5
1,155,136 + 0.6
1,155,155 - 1.1
1,155,155 - -1.0
1,155,156 - 0.6
1,155,187 + -1.0
1,155,204 - 0.1
1,155,212 + -0.1
1,155,227 + -0.2
1,155,229 + 0.3
1,155,238 + 0.7
1,155,330 - 0.6