Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7209

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7208: 15576 - K03361 CDC4 F-box and WD-40 domain protein CDC4, at 1123960 to 1127394 15576 mRNA_7209: 15577 - K01408 IDE, ide insulysin, at 1127911 to 1131746 15577 mRNA_7210: 15578 - K15271 HFM1, MER3 ATP-dependent DNA helicase HFM1/MER3, at 1132597 to 1139005 15578

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,126,987 + 15576 mRNA_7208 0.88 -0.7
1,127,425 + 0.3
1,127,454 - 0.3
1,127,563 + 0.7
1,127,718 - -0.3
1,127,731 - 0.0
1,127,744 + 0.6
1,127,859 + 2.1
1,127,865 + 0.2
1,127,870 + 2.1
1,128,005 + 0.7
1,128,014 + 0.4
1,128,562 - 15577 mRNA_7209 0.17 1.9
1,128,759 - 15577 mRNA_7209 0.22 -0.3
1,128,765 - 15577 mRNA_7209 0.22 -0.7
1,129,222 + 15577 mRNA_7209 0.34 0.1
1,129,356 + 15577 mRNA_7209 0.38 -0.2
1,129,657 + 15577 mRNA_7209 0.46 0.2
1,130,234 - 15577 mRNA_7209 0.61 1.0
1,130,372 + 15577 mRNA_7209 0.64 -0.1
1,130,393 - 15577 mRNA_7209 0.65 0.2
1,131,228 - 15577 mRNA_7209 0.86 -2.0
1,131,385 - -0.1
1,131,521 - 0.5
1,131,534 + 0.1
1,131,642 - 0.3
1,131,662 - 0.6
1,131,688 - 0.3
1,131,792 - 0.6
1,131,857 + 0.4
1,131,947 - 0.2
1,131,953 - 0.4
1,131,959 + -0.9
1,131,965 - 0.2
1,131,965 + 0.4
1,132,125 - -0.7
1,132,133 + 0.6
1,132,136 + -0.0
1,132,140 - 1.4
1,132,143 + 0.1
1,132,150 + 1.6
1,132,152 + 0.3
1,132,161 - 0.0
1,132,170 + -0.1
1,132,180 + -0.3
1,132,180 + 1.2
1,132,189 - 0.2
1,132,209 - 1.8
1,132,274 - 1.0
1,132,308 + 1.4
1,132,350 - 0.8
1,132,350 - -0.1
1,132,357 + 1.3
1,132,550 + 0.4