Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7105

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7104: 15472 - K09448 TEAD transcriptional enhancer factor, at 888433 to 891786 15472 mRNA_7105: 15473 - KOG1890 Phosphoinositide phosphatase SAC1, at 892209 to 895612 15473 mRNA_7106: 15474 - K11313 SUPT3H, SPT3 transcription initiation protein SPT3, at 895700 to 897201 15474

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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891,228 + 15472 mRNA_7104 0.83 0.2
891,249 + 15472 mRNA_7104 0.84 1.2
891,338 - 15472 mRNA_7104 0.87 -1.4
891,358 - 15472 mRNA_7104 0.87 0.4
891,367 + 15472 mRNA_7104 0.87 -0.8
891,384 - 15472 mRNA_7104 0.88 0.3
891,536 - 0.3
891,555 - 0.4
891,615 - 0.7
891,690 - -0.1
891,694 + 0.9
891,699 - 1.1
891,699 - 0.9
891,716 - -0.3
891,726 - 0.3
891,844 - -0.1
891,859 - 0.0
891,873 - 0.5
891,873 - 1.5
891,921 + 0.7
891,924 - 1.7
891,930 - -1.8
892,116 - 1.2
892,122 + 1.1
892,137 + 0.6
892,162 - 1.6
892,170 - -0.2
892,172 - 0.3
892,183 + -0.5
892,192 - 1.9
892,198 - 1.6
892,322 + 0.2
892,345 - 0.3
892,345 + 0.6
892,397 - -0.1
892,475 - -0.2
892,480 - 0.4
892,486 + 0.0
892,650 - 15473 mRNA_7105 0.13 0.8
892,914 + 15473 mRNA_7105 0.21 0.5
893,214 - 15473 mRNA_7105 0.30 -0.1
893,339 + 15473 mRNA_7105 0.33 -0.7
894,201 - 15473 mRNA_7105 0.59 0.4
894,437 + 15473 mRNA_7105 0.65 1.3
894,489 - 15473 mRNA_7105 0.67 -0.3
894,513 + 15473 mRNA_7105 0.68 0.3
894,977 + 15473 mRNA_7105 0.81 1.9
895,002 - 15473 mRNA_7105 0.82 1.3
895,399 - 0.0
895,417 - 0.4
896,016 + 15474 mRNA_7106 0.21 0.2
896,481 - 15474 mRNA_7106 0.52 0.1