Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7085

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7084: 15452 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 842141 to 843806 15452 mRNA_7085: 15453 - HMMPfam-TRF2-interacting telomeric protein/Rap1 - C terminal domain-PF11626,SUPERFAMILY--SSF46689, at 843971 to 847409 15453 mRNA_7086: 15454 - HMMPfam-Shugoshin C terminus-PF07557, at 847556 to 851531 15454

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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843,075 + 15452 mRNA_7084 0.56 0.3
843,154 + 15452 mRNA_7084 0.61 -0.2
843,185 - 15452 mRNA_7084 0.63 -0.1
843,294 + 15452 mRNA_7084 0.69 0.5
843,576 + 15452 mRNA_7084 0.86 0.4
843,576 + 15452 mRNA_7084 0.86 0.3
843,584 - 15452 mRNA_7084 0.87 0.7
843,749 + 1.0
845,338 + 15453 mRNA_7085 0.40 1.2
845,340 + 15453 mRNA_7085 0.40 0.2
846,068 + 15453 mRNA_7085 0.61 -0.2
846,264 + 15453 mRNA_7085 0.67 1.2
847,056 + 15453 mRNA_7085 0.90 1.3
847,462 - 0.1
847,480 - -0.2
847,519 + 0.7
847,789 - 0.1
848,099 + 15454 mRNA_7086 0.14 0.1