Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7038

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7037: 15405 - K08254 E3.2.1.59 glucan endo-1,3-alpha-glucosidase, at 722546 to 724803 15405 mRNA_7038: 15406 - K15458 SAP185_190 SIT4-associating protein SAP185/190, at 725352 to 729605 15406 mRNA_7039: 15407 - Hypothetical Protein, at 729956 to 731972 15407

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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724,514 - 15405 mRNA_7037 0.87 0.6
724,780 + -0.3
724,793 - -0.1
725,147 + 0.1
725,267 - 1.0
725,286 - -0.0
725,427 + 0.3
725,516 - 0.4
725,803 - 15406 mRNA_7038 0.11 -1.0
725,847 + 15406 mRNA_7038 0.12 1.6
725,855 + 15406 mRNA_7038 0.12 -0.6
725,991 - 15406 mRNA_7038 0.15 0.4
726,374 - 15406 mRNA_7038 0.24 -0.6
727,181 - 15406 mRNA_7038 0.43 -0.2
727,298 + 15406 mRNA_7038 0.46 2.8
727,300 - 15406 mRNA_7038 0.46 1.4
727,601 - 15406 mRNA_7038 0.53 1.3
727,669 - 15406 mRNA_7038 0.54 1.6
727,686 + 15406 mRNA_7038 0.55 -0.3
728,491 + 15406 mRNA_7038 0.74 -1.0
728,568 + 15406 mRNA_7038 0.76 0.3
728,641 + 15406 mRNA_7038 0.77 -0.3
728,924 + 15406 mRNA_7038 0.84 0.4
729,371 + 0.9
729,491 + 1.9
729,500 - 2.2
729,643 - 0.1
729,702 - 0.7
729,777 + 1.4
729,784 + 0.3
729,803 + 0.3
729,803 + -0.3
729,806 + -1.3
729,809 + 0.5
729,813 + 1.2
729,815 + -0.1
729,947 + 0.4
729,976 - -0.5
730,208 - 15407 mRNA_7039 0.12 0.2
730,510 + 15407 mRNA_7039 0.27 0.1