Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7016

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7015: 15383 - KOG2913 Predicted membrane protein, at 678211 to 680397 15383 mRNA_7016: 15384 - K01142 E3.1.11.2, xthA exodeoxyribonuclease III, at 680551 to 683526 15384 mRNA_7017: 15385 - K03574 mutT, NUDT15, MTH2 8-oxo-dGTP diphosphatase, at 683640 to 684233 15385

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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679,572 - 15383 mRNA_7015 0.62 1.3
679,869 - 15383 mRNA_7015 0.76 0.4
680,157 - 15383 mRNA_7015 0.89 0.5
680,585 + 0.2
680,694 - 0.1
680,711 + -0.5
680,745 + 0.6
680,749 + 0.5
681,158 - 15384 mRNA_7016 0.20 1.5
681,343 - 15384 mRNA_7016 0.27 1.8
681,442 + 15384 mRNA_7016 0.30 0.2
681,639 + 15384 mRNA_7016 0.37 1.1
681,720 - 15384 mRNA_7016 0.39 0.7
681,752 + 15384 mRNA_7016 0.40 0.5
682,025 + 15384 mRNA_7016 0.50 -0.3
682,027 - 15384 mRNA_7016 0.50 0.1
682,031 + 15384 mRNA_7016 0.50 0.7
682,167 - 15384 mRNA_7016 0.54 0.2
682,170 + 15384 mRNA_7016 0.54 -0.6
682,179 + 15384 mRNA_7016 0.55 0.2
682,186 + 15384 mRNA_7016 0.55 0.4
682,199 + 15384 mRNA_7016 0.55 0.0
682,500 - 15384 mRNA_7016 0.65 0.9
682,564 - 15384 mRNA_7016 0.68 -0.7
682,633 - 15384 mRNA_7016 0.70 0.7
682,648 + 15384 mRNA_7016 0.70 1.8
682,948 + 15384 mRNA_7016 0.81 0.6
682,978 - 15384 mRNA_7016 0.82 0.6
683,002 + 15384 mRNA_7016 0.82 1.2
683,114 + 15384 mRNA_7016 0.86 -0.5
683,202 + 15384 mRNA_7016 0.89 1.6
683,241 - 0.2
683,245 + -0.1
683,412 + 0.9
683,549 + 0.3
683,985 - 15385 mRNA_7017 0.58 0.0
683,996 - 15385 mRNA_7017 0.60 -0.9
684,100 + 15385 mRNA_7017 0.77 0.9
684,141 - 15385 mRNA_7017 0.84 -0.1
684,293 + 0.7