Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6988

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6987: 15355 - BLAST plasma membrane protein [Pseudozyma hubeiensis SY62], at 606395 to 609554 15355 mRNA_6988: 15356 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 609889 to 611754 15356 mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611825 to 615054 15357

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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609,018 + 15355 mRNA_6987 0.83 1.3
609,037 + 15355 mRNA_6987 0.84 0.2
609,134 + 15355 mRNA_6987 0.87 0.2
609,168 - 15355 mRNA_6987 0.88 0.3
609,432 + 0.8
609,450 - -1.1
609,482 + -0.3
609,514 + 0.2
609,752 + -0.5
609,761 - 1.2
609,766 - 0.8
609,774 + 0.6
609,775 - 0.8
609,780 + 0.5
609,780 + 1.6
609,795 - 0.2
609,796 - 1.1
609,800 + -1.2
609,805 - 0.4
609,809 + 0.8
609,813 - -0.1
609,816 + 0.1
609,817 - 0.1
609,994 + -0.4
609,997 + 1.0
610,282 - 15356 mRNA_6988 0.21 -0.4
610,520 + 15356 mRNA_6988 0.34 -0.3
610,569 - 15356 mRNA_6988 0.36 -0.3
610,863 + 15356 mRNA_6988 0.52 0.1
610,886 + 15356 mRNA_6988 0.53 -0.1
611,440 - 15356 mRNA_6988 0.83 -0.3
611,583 + 0.2
611,759 - -0.1
612,011 - -2.6
612,030 - -1.0
612,034 + -1.5
612,644 - 15357 mRNA_6989 0.25 0.0