Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6960

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6959: 15327 - K14805 DDX24, MAK5 ATP-dependent RNA helicase DDX24/MAK5, at 537105 to 540222 15327 mRNA_6960: 15328 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 540769 to 543741 15328 mRNA_6961: 15329 - Hypothetical Protein, at 543904 to 547836 15329

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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540,312 + 0.2
540,339 + -0.4
540,437 - 0.1
540,441 - 0.5
540,446 + 0.4
540,449 - 0.5
540,452 + -0.1
540,469 - 1.3
540,476 + 0.4
540,591 + 1.9
540,600 + 0.5
540,612 - 0.6
540,628 + -0.0
540,738 - 1.5
540,758 - 0.2
540,774 + -0.5
540,778 + 0.5
540,891 - 0.5
540,920 - 0.5
541,039 + -0.8
541,315 - 15328 mRNA_6960 0.18 0.3
541,469 - 15328 mRNA_6960 0.24 -0.5
541,660 + 15328 mRNA_6960 0.30 -0.7
541,750 + 15328 mRNA_6960 0.33 -0.3
541,777 + 15328 mRNA_6960 0.34 -0.0
541,882 - 15328 mRNA_6960 0.37 0.3
541,898 + 15328 mRNA_6960 0.38 0.2
542,045 - 15328 mRNA_6960 0.43 0.1
542,228 + 15328 mRNA_6960 0.49 0.1
542,342 - 15328 mRNA_6960 0.53 1.7
542,637 - 15328 mRNA_6960 0.63 0.3
542,820 + 15328 mRNA_6960 0.69 0.8
543,367 + 15328 mRNA_6960 0.87 0.0
543,625 - 1.7
543,638 - 0.6
543,797 - 0.7
544,113 + 0.0
544,371 - 15329 mRNA_6961 0.12 -0.5
544,494 - 15329 mRNA_6961 0.15 -1.3
544,494 - 15329 mRNA_6961 0.15 0.4
544,506 + 15329 mRNA_6961 0.15 -0.7
544,580 + 15329 mRNA_6961 0.17 0.3