Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6722

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6721: 15089 - K14554 UTP21, WDR36 U3 small nucleolar RNA-associated protein 21, at 1535454 to 1538954 15089 mRNA_6722: 15090 - K17908 WIPI, ATG18 autophagy-related protein 18, at 1539294 to 1541156 15090 mRNA_6723: 15091 - K01078 E3.1.3.2 acid phosphatase, at 1542029 to 1544062 15091

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,539,005 - 0.3
1,539,036 + 0.1
1,539,037 - 1.6
1,539,056 - 0.5
1,539,123 + 1.9
1,539,373 - 0.8
1,539,461 - -1.1
1,539,611 + 15090 mRNA_6722 0.17 0.4
1,539,769 - 15090 mRNA_6722 0.25 0.9
1,539,906 - 15090 mRNA_6722 0.33 1.0
1,539,959 + 15090 mRNA_6722 0.36 0.0
1,540,061 - 15090 mRNA_6722 0.41 1.4
1,540,140 - 15090 mRNA_6722 0.45 0.8
1,540,678 + 15090 mRNA_6722 0.74 -0.3
1,540,914 - 15090 mRNA_6722 0.87 -0.4
1,541,215 - 0.3
1,541,255 - -2.0
1,541,510 - 1.0
1,541,644 + 0.1
1,541,806 - -0.1
1,541,815 - -0.5
1,541,820 + 0.7
1,541,930 - -0.4
1,541,935 - -0.3
1,541,938 + 0.4
1,541,947 - -0.1
1,541,948 - 0.2
1,542,005 - 0.1
1,542,084 - 1.5
1,542,097 - 1.0