Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6639

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6639: 15007 - K00362 nirB nitrite reductase (NADH) large subunit, at 1317697 to 1321815 15007 mRNA_6640: 15008 - K10534 NR nitrate reductase (NAD(P)H), at 1322487 to 1325707 15008

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,316,874 - -0.1
1,316,921 - 0.6
1,317,067 - -0.3
1,317,080 + 1.2
1,317,145 + 0.1
1,317,149 + 0.9
1,317,150 - 0.6
1,317,153 + 0.3
1,317,155 + 0.3
1,317,160 + -1.0
1,317,184 + 2.1
1,317,212 - 0.0
1,317,215 - 1.6
1,317,225 - 0.0
1,317,226 - -1.1
1,317,434 - 0.4
1,317,508 + -1.5
1,317,517 - 0.1
1,317,530 + -0.2
1,317,533 - -0.1
1,317,535 + 0.5
1,317,543 + 0.7
1,317,674 + 0.3
1,317,685 - 0.2
1,317,694 + 0.3
1,317,792 - 1.0
1,318,351 + 15007 mRNA_6639 0.16 0.6
1,318,426 - 15007 mRNA_6639 0.18 -0.9
1,318,568 - 15007 mRNA_6639 0.21 0.6
1,318,709 - 15007 mRNA_6639 0.25 0.0
1,318,817 + 15007 mRNA_6639 0.27 0.1
1,319,020 + 15007 mRNA_6639 0.32 -0.0
1,319,130 - 15007 mRNA_6639 0.35 -0.8
1,319,134 + 15007 mRNA_6639 0.35 -1.2
1,319,521 - 15007 mRNA_6639 0.44 0.3
1,319,724 + 15007 mRNA_6639 0.49 0.3
1,320,024 - 15007 mRNA_6639 0.56 1.1
1,320,166 - 15007 mRNA_6639 0.60 0.4
1,320,303 - 15007 mRNA_6639 0.63 0.6
1,320,309 + 15007 mRNA_6639 0.63 0.7
1,320,321 + 15007 mRNA_6639 0.64 1.2
1,320,339 - 15007 mRNA_6639 0.64 -0.0
1,320,637 + 15007 mRNA_6639 0.71 0.1
1,320,711 - 15007 mRNA_6639 0.73 1.0
1,320,724 + 15007 mRNA_6639 0.73 0.0
1,321,020 - 15007 mRNA_6639 0.81 0.0
1,321,062 + 15007 mRNA_6639 0.82 0.8
1,321,145 + 15007 mRNA_6639 0.84 0.0
1,321,145 - 15007 mRNA_6639 0.84 1.5
1,321,515 + 0.2
1,321,765 + 1.1
1,322,117 - 0.3
1,322,488 - 0.6
1,322,543 - 0.3
1,322,657 + 0.4
1,322,658 - 1.0
1,322,782 - -0.0
1,322,797 + -0.1
1,322,814 + 15008 mRNA_6640 0.10 0.0