Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6614

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6613: 14981 - K08740 MSH4 DNA mismatch repair protein MSH4, at 1245585 to 1249013 14981 mRNA_6614: 14982 - HMMPfam-MRC1-like domain-PF09444, at 1249488 to 1254442 14982 mRNA_6615: 14983 - Hypothetical Protein, at 1254532 to 1256049 14983

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,248,544 + 14981 mRNA_6613 0.86 1.5
1,248,657 - 14981 mRNA_6613 0.90 1.3
1,249,002 + 0.1
1,249,244 - -1.0
1,249,250 + -0.4
1,249,251 - -0.6
1,249,287 - 1.3
1,249,291 - 0.1
1,249,461 + 0.9
1,253,048 + 14982 mRNA_6614 0.72 0.8
1,254,438 - 2.4
1,254,534 + 1.5
1,254,834 - 14983 mRNA_6615 0.20 1.2
1,254,948 - 14983 mRNA_6615 0.27 0.6
1,254,965 - 14983 mRNA_6615 0.29 -0.3
1,254,971 + 14983 mRNA_6615 0.29 -0.7
1,255,219 - 14983 mRNA_6615 0.45 -0.6
1,255,435 - 14983 mRNA_6615 0.59 1.0