Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6589

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6588: 14956 - K00966 GMPP mannose-1-phosphate guanylyltransferase, at 1167878 to 1169516 14956 mRNA_6589: 14957 - K12386 CTNS cystinosin, at 1169958 to 1171396 14957 mRNA_6590: 14958 - K03009 RPB12, POLR2K DNA-directed RNA polymerases I, II, and III subunit RPABC4, at 1171853 to 1172203 14958

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,169,594 + -0.4
1,169,597 + 0.2
1,169,601 + 0.7
1,169,603 - -0.4
1,169,608 + -0.9
1,169,705 - -0.2
1,169,732 - -0.2
1,169,733 - 0.5
1,169,734 + -0.4
1,169,736 - 0.4
1,169,772 + 0.8
1,169,856 - -0.5
1,169,880 + 0.3
1,169,893 - 0.5
1,169,895 + -0.0
1,169,895 + 1.0
1,169,895 - 0.5
1,169,895 + 0.5
1,169,905 + -1.0
1,169,910 + 0.7
1,169,928 - 0.0
1,169,928 - 0.9
1,169,929 + 1.7
1,169,934 - 0.5
1,169,942 + -0.0
1,169,955 - -0.2
1,169,959 - 1.6
1,169,983 + -0.1
1,169,985 - 0.7
1,169,987 + 0.2
1,169,989 + 0.7
1,169,993 + -0.2
1,169,993 - 0.9
1,169,995 + 0.3
1,169,997 - 0.1
1,169,997 + 0.4
1,170,003 + 1.3
1,170,003 - 0.3
1,170,005 - 1.9
1,170,012 + 1.0
1,170,015 - 0.2
1,170,163 + 14957 mRNA_6589 0.14 1.0
1,170,164 - 14957 mRNA_6589 0.14 0.1
1,170,166 - 14957 mRNA_6589 0.14 -0.5
1,170,295 - 14957 mRNA_6589 0.23 0.3
1,170,472 + 14957 mRNA_6589 0.36 0.4
1,170,473 + 14957 mRNA_6589 0.36 -0.2
1,170,476 + 14957 mRNA_6589 0.36 -1.0
1,170,612 - 14957 mRNA_6589 0.45 0.4
1,170,889 + 14957 mRNA_6589 0.65 -0.4
1,171,027 - 14957 mRNA_6589 0.74 0.6
1,171,056 + 14957 mRNA_6589 0.76 -0.1
1,171,201 - 14957 mRNA_6589 0.86 0.5
1,171,326 - 0.2
1,171,340 - 0.2
1,171,356 - -1.1
1,171,475 + -0.5
1,171,486 - -0.1
1,171,637 - 1.1
1,172,116 + 14958 mRNA_6590 0.75 0.9