Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6576

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6575: 14943 - KOG0440 Cell cycle-associated protein Mob1-1, at 1139810 to 1140979 14943 mRNA_6576: 14944 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 1141433 to 1143037 14944 mRNA_6577: 14945 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013,SUPERFAMILY--SSF54160, at 1143397 to 1147463 14945

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,141,022 + 0.6
1,141,148 - 0.2
1,141,149 + 0.7
1,141,165 - 0.2
1,141,180 - -0.3
1,141,191 + 0.1
1,141,226 + 0.1
1,141,324 - -0.6
1,141,327 - -0.3
1,141,336 - 0.3
1,141,337 - -0.6
1,141,375 + 0.4
1,141,378 + 1.2
1,141,380 - 0.9
1,141,387 + 0.3
1,141,391 - -0.0
1,141,398 + -1.1
1,141,398 + -0.0
1,141,406 + 0.3
1,141,406 + 0.9
1,141,417 + -0.4
1,141,503 - 0.5
1,141,552 - 0.0
1,141,556 + 0.3
1,141,556 - 0.8
1,141,657 - 14944 mRNA_6576 0.14 0.5
1,141,658 + 14944 mRNA_6576 0.14 -0.1
1,141,661 - 14944 mRNA_6576 0.14 0.3
1,141,662 - 14944 mRNA_6576 0.14 0.2
1,141,682 + 14944 mRNA_6576 0.16 1.0
1,141,687 - 14944 mRNA_6576 0.16 0.1
1,141,691 - 14944 mRNA_6576 0.16 -0.1
1,141,697 - 14944 mRNA_6576 0.16 1.5
1,141,831 - 14944 mRNA_6576 0.25 0.8
1,142,000 + 14944 mRNA_6576 0.35 0.4
1,142,116 - 14944 mRNA_6576 0.43 0.8
1,142,162 + 14944 mRNA_6576 0.45 0.5
1,142,306 + 14944 mRNA_6576 0.54 0.2
1,142,381 - 14944 mRNA_6576 0.59 0.1
1,142,390 + 14944 mRNA_6576 0.60 -0.1
1,142,409 + 14944 mRNA_6576 0.61 0.8
1,142,535 + 14944 mRNA_6576 0.69 0.9
1,142,550 + 14944 mRNA_6576 0.70 0.2
1,142,661 - 14944 mRNA_6576 0.77 -0.6
1,142,860 + 14944 mRNA_6576 0.89 0.7
1,142,976 - -0.3
1,143,028 + -0.2
1,143,139 + -0.2
1,143,198 + 0.5
1,143,256 - -0.3
1,143,281 - 0.7
1,143,411 + 0.5
1,143,424 - 0.7
1,143,430 - 0.5
1,143,432 + -0.6
1,143,727 - 0.2
1,143,892 - 14945 mRNA_6577 0.12 0.3
1,143,894 - 14945 mRNA_6577 0.12 -0.2