Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6537

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6536: 14904 - HMMPfam-Protein of unknown function (DUF837)-PF05769, at 1023887 to 1025304 14904 mRNA_6537: 14905 - Hypothetical Protein, at 1025496 to 1027566 14905 mRNA_6538: 14906 - BLAST AGC/AKT protein kinase [Microbotryum lychnidis-dioica..., at 1027896 to 1028222 14906 mRNA_6539: 14907 - K19800 SCH9 serine/threonine protein kinase SCH9, at 1028539 to 1031379 14907

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,024,705 - 14904 mRNA_6536 0.58 0.2
1,024,900 + 14904 mRNA_6536 0.71 0.6
1,024,954 + 14904 mRNA_6536 0.75 -1.3
1,025,021 + 14904 mRNA_6536 0.80 0.2
1,025,024 - 14904 mRNA_6536 0.80 0.2
1,025,290 + 0.5
1,025,316 - -0.1
1,025,417 + -0.8
1,025,418 - 0.2
1,025,497 - -0.8
1,025,507 - 0.5
1,025,509 - -0.3
1,025,518 - -0.2
1,025,531 - 0.6
1,025,599 - -0.2
1,026,314 + 14905 mRNA_6537 0.39 0.1
1,026,348 - 14905 mRNA_6537 0.41 0.9
1,026,609 + 14905 mRNA_6537 0.54 0.1
1,026,687 - 14905 mRNA_6537 0.58 -0.5
1,027,081 - 14905 mRNA_6537 0.77 -0.9
1,027,091 + 14905 mRNA_6537 0.77 0.7
1,027,094 - 14905 mRNA_6537 0.77 0.7
1,027,107 - 14905 mRNA_6537 0.78 0.1
1,027,212 + 14905 mRNA_6537 0.83 0.1
1,027,385 - 0.5
1,027,394 - 0.2
1,027,412 - 0.5
1,027,520 + 0.4
1,027,536 - -0.3
1,027,665 + 0.3
1,027,688 - 0.3
1,027,690 + 0.7
1,027,690 - 0.4
1,027,690 + 0.7
1,027,697 + 0.8
1,027,710 + 0.8
1,027,710 + 0.4
1,027,842 - 0.2
1,027,850 + -0.3
1,027,855 + 0.1
1,027,860 - 0.8
1,028,000 + 14906 mRNA_6538 0.32 -0.1
1,028,008 - 14906 mRNA_6538 0.34 -0.2
1,028,009 + 14906 mRNA_6538 0.35 0.6
1,028,031 + 14906 mRNA_6538 0.41 0.9
1,028,033 + 14906 mRNA_6538 0.42 1.8
1,028,140 + 14906 mRNA_6538 0.75 1.1
1,028,148 + 14906 mRNA_6538 0.77 0.7
1,028,154 + 14906 mRNA_6538 0.79 0.2
1,028,159 - 14906 mRNA_6538 0.80 0.4
1,028,179 - 14906 mRNA_6538 0.87 0.9
1,028,297 - 0.9
1,028,300 - 0.6
1,028,307 + 0.3
1,028,311 + -1.0
1,028,312 + 0.3
1,028,313 + 0.5
1,028,486 + 0.5