Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6455

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6454: 14822 - BLAST putative nucleoporin-interacting protein NIC96 [Rhizo..., at 828916 to 829758 14822 mRNA_6455: 14823 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 829918 to 832599 14823 mRNA_6456: 14824 - KOG3386 Copper transporter, at 832963 to 833757 14824

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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828,994 + -0.7
828,994 + 0.3
828,995 - 0.3
829,594 + 14822 mRNA_6454 0.80 0.1
829,721 - -0.1
829,722 + -0.4
829,987 - -0.2
830,183 - 1.5
830,866 - 14823 mRNA_6455 0.35 0.1
830,984 - 14823 mRNA_6455 0.40 -1.2
831,071 + 14823 mRNA_6455 0.43 0.2
831,201 + 14823 mRNA_6455 0.48 1.4
831,608 + 14823 mRNA_6455 0.63 0.4
831,756 + 14823 mRNA_6455 0.69 -0.6
831,770 - 14823 mRNA_6455 0.69 -0.0
832,226 + 14823 mRNA_6455 0.86 0.4
832,233 + 14823 mRNA_6455 0.86 0.3
832,326 + 14823 mRNA_6455 0.90 0.3
832,462 + 0.4
832,466 - -0.2
832,478 + -0.1
832,642 + 0.1
832,749 + 0.5
832,763 - 0.5
832,766 - 0.7
832,771 + 0.4
832,775 + 0.4
832,794 + 0.7
832,810 - 0.8
832,949 + 0.9
832,962 + 0.1
833,533 + 14824 mRNA_6456 0.72 0.2