Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6270

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6269: 14637 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 405556 to 407019 14637 mRNA_6270: 14638 - KOG2645 Type I phosphodiesterase/nucleotide pyrophosphatase, at 407745 to 410533 14638 mRNA_6271: 14639 - Hypothetical Protein, at 410534 to 411923 14639

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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406,775 + 14637 mRNA_6269 0.83 0.3
407,079 - -0.1
407,092 - 0.4
407,096 + -0.3
407,201 - 0.4
407,216 - 0.0
407,230 + -0.3
407,234 - 0.1
407,491 - 0.7
407,503 - 2.4
407,524 - -0.1
407,527 - 1.7
407,535 - 0.1
407,544 - -1.9
407,548 - 0.5
407,552 + 0.1
407,670 - 1.1
407,673 - 0.0
407,680 + 0.7
407,847 - 0.1
407,985 - 0.3
407,994 + 0.8
408,006 + 1.2
408,266 - 14638 mRNA_6270 0.19 1.0
408,321 + 14638 mRNA_6270 0.21 0.8
408,416 + 14638 mRNA_6270 0.24 1.3
408,716 + 14638 mRNA_6270 0.35 1.6
408,721 - 14638 mRNA_6270 0.35 0.2
409,016 + 14638 mRNA_6270 0.46 -0.3
409,124 - 14638 mRNA_6270 0.49 0.4
409,139 - 14638 mRNA_6270 0.50 -1.3
409,271 - 14638 mRNA_6270 0.55 0.0
409,434 - 14638 mRNA_6270 0.61 -1.0
409,955 - 14638 mRNA_6270 0.79 0.0
410,165 - 14638 mRNA_6270 0.87 1.0
410,174 + 14638 mRNA_6270 0.87 0.3
410,301 - -0.3
410,447 - 1.3
410,471 + 0.6
410,476 - -0.4
410,572 + -1.5
410,592 - 0.8
410,599 + 1.5
410,601 + -0.4
410,606 + -0.0
410,607 + -0.1
410,617 - 0.8
410,765 - 14639 mRNA_6271 0.17 -0.3
410,770 - 14639 mRNA_6271 0.17 0.9
410,781 + 14639 mRNA_6271 0.18 0.9
410,781 - 14639 mRNA_6271 0.18 -0.2
410,789 + 14639 mRNA_6271 0.18 1.1
410,792 + 14639 mRNA_6271 0.19 -0.5
410,792 - 14639 mRNA_6271 0.19 -0.1
410,797 - 14639 mRNA_6271 0.19 -0.3
410,816 + 14639 mRNA_6271 0.20 1.7
410,925 - 14639 mRNA_6271 0.28 0.7
410,928 + 14639 mRNA_6271 0.28 0.6
411,080 + 14639 mRNA_6271 0.39 0.4
411,095 - 14639 mRNA_6271 0.40 1.4
411,106 + 14639 mRNA_6271 0.41 1.2
411,190 + 14639 mRNA_6271 0.47 1.0
411,233 - 14639 mRNA_6271 0.50 0.2
411,253 - 14639 mRNA_6271 0.52 0.6
411,254 + 14639 mRNA_6271 0.52 -0.0
411,398 - 14639 mRNA_6271 0.62 -0.5
411,522 - 14639 mRNA_6271 0.71 0.3
411,527 - 14639 mRNA_6271 0.71 -0.2