Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6260

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374998 to 377098 14627 mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377562 to 381779 14628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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377,019 - 0.4
377,463 - -0.7
377,929 - 1.6
378,598 - 14628 mRNA_6260 0.25 1.5
378,739 - 14628 mRNA_6260 0.28 0.5
378,758 - 14628 mRNA_6260 0.28 0.3
378,900 + 14628 mRNA_6260 0.32 0.3
379,070 + 14628 mRNA_6260 0.36 0.6
379,649 - 14628 mRNA_6260 0.49 0.4
379,743 - 14628 mRNA_6260 0.52 1.2
379,748 + 14628 mRNA_6260 0.52 0.3
380,066 - 14628 mRNA_6260 0.59 0.5
380,082 - 14628 mRNA_6260 0.60 0.2
380,660 + 14628 mRNA_6260 0.73 0.5
380,821 - 14628 mRNA_6260 0.77 -0.2
380,943 - 14628 mRNA_6260 0.80 0.1
380,964 - 14628 mRNA_6260 0.81 0.1
381,410 - 0.5
381,534 - 0.6
381,559 + 0.2
381,687 - 0.6
381,740 - 0.4
381,847 + 0.6
381,855 - -1.3
381,867 + -0.3
381,867 + 1.6
381,874 + 0.1
381,882 - -0.2
381,896 + 0.9
381,899 + 0.7
381,936 - 0.5
381,941 + 0.8
381,941 + -0.5
381,942 - 1.2
381,943 - -1.2
381,943 - 1.6
381,946 + 0.2
381,946 + -0.2
381,948 + 0.9
381,948 - 0.5
381,964 - -0.3
381,979 - 0.6
381,981 + 1.3
381,993 + 2.6
382,008 - 0.7
382,089 + 0.4
382,089 + -0.1
382,104 + -0.2
382,110 - -0.2
382,132 + -0.0
382,143 - -0.0
382,189 - -0.1
382,195 - 0.4
382,212 + -0.1
382,220 + 0.9
382,238 - 0.7
382,240 - 0.2
382,249 + 0.8
382,254 - -0.3
382,264 - 1.4
382,289 - -0.4
382,293 - 0.1
382,307 + -0.9
382,324 + -0.0
382,332 + 0.3
382,340 + 0.1
382,345 + 1.2
382,349 - 0.2
382,360 + -0.1
382,363 + -0.2
382,365 + 0.6
382,369 + 0.2
382,370 - 0.2
382,370 - -0.1
382,375 + -0.3
382,381 + 0.3
382,418 - -0.3
382,423 + -0.2
382,433 + 0.7
382,434 - -0.2
382,436 + 0.2
382,436 - 1.4
382,436 - -0.1
382,437 - 0.3
382,448 - 1.3
382,449 + -0.3
382,451 + -0.1
382,471 - 0.0
382,503 + 0.7
382,516 + -0.5
382,529 - -0.9
382,531 + 0.2
382,531 + 1.2
382,535 + 1.5
382,542 + 0.2
382,543 - -0.5
382,546 - -0.4
382,549 - 0.2
382,550 - -0.0
382,556 + 0.6
382,566 - 0.1
382,570 - 2.0
382,571 - 0.1
382,573 - -0.1
382,575 - 0.1
382,583 - 0.1
382,583 - -0.2
382,586 + 0.5
382,586 + -0.1
382,587 + 1.3
382,588 - -0.6
382,588 - 0.6
382,590 - 0.2
382,592 - 0.0
382,594 + -0.6
382,603 + 0.2
382,652 - -0.1
382,663 - 0.3
382,691 - 0.1
382,695 + 2.1
382,700 + 1.8
382,707 - 0.6
382,713 - 0.9
382,724 + -0.3
382,726 + 0.0
382,732 + 0.1