Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6062

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6061: 14429 - KOG3772 M-phase inducer phosphatase, at 1548729 to 1549422 14429 mRNA_6062: 14430 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 1549948 to 1551724 14430 mRNA_6063: 14431 - KOG0519 Sensory transduction histidine kinase, at 1552010 to 1556333 14431

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,549,021 + 14429 mRNA_6061 0.42 0.1
1,549,245 + 14429 mRNA_6061 0.74 0.9
1,549,546 + 0.2
1,549,707 + -0.0
1,549,711 + 0.4
1,549,888 - -0.2
1,549,892 - 0.7
1,550,044 - 0.1
1,550,618 - 14430 mRNA_6062 0.38 0.4
1,550,755 + 14430 mRNA_6062 0.45 1.6
1,550,893 + 14430 mRNA_6062 0.53 0.6
1,550,904 - 14430 mRNA_6062 0.54 0.7
1,551,481 + 14430 mRNA_6062 0.86 0.4
1,551,502 - 14430 mRNA_6062 0.87 -0.2
1,551,610 - 0.3
1,551,633 - -0.1
1,551,641 + 0.4
1,551,651 + 0.8
1,551,652 - 1.3
1,551,792 - 0.3
1,551,800 - -0.3
1,551,806 - -1.1
1,551,812 - 0.1
1,551,933 - -0.0
1,551,948 - -0.1
1,551,953 - 0.9
1,551,964 + -1.1
1,551,965 + 0.4
1,551,965 + 1.6
1,552,019 - 0.2
1,552,024 - 0.4
1,552,025 + 1.5
1,552,026 - 1.8
1,552,031 - 0.4
1,552,031 - -1.4
1,552,035 - 0.2
1,552,035 + 0.3
1,552,036 - 1.9
1,552,036 + 0.1
1,552,040 - 0.9
1,552,040 + 0.4
1,552,043 + 0.5
1,552,043 - 1.3
1,552,045 + -0.1
1,552,057 + 1.2
1,552,125 - 0.6
1,552,193 - 0.1
1,552,199 + 1.5
1,552,200 + 0.1