Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6049

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6048: 14416 - Interpro WSTF, HB1, Itc1p, MBD9 motif 1, at 1517232 to 1519356 14416 mRNA_6049: 14417 - K08517 SEC22 vesicle transport protein SEC22, at 1519896 to 1521308 14417 mRNA_6050: 14418 - K03942 NDUFV1 NADH dehydrogenase (ubiquinone) flavoprotein 1, at 1521571 to 1523726 14418

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,519,024 - 14416 mRNA_6048 0.84 -0.5
1,519,101 - 14416 mRNA_6048 0.88 -0.6
1,519,243 - 0.1
1,519,490 - -0.3
1,519,657 + 0.4
1,519,666 - 0.3
1,519,931 - -0.8
1,519,932 - -0.0
1,519,950 - 0.7
1,520,108 + 14417 mRNA_6049 0.15 0.3
1,520,136 - 14417 mRNA_6049 0.17 0.6
1,520,222 - 14417 mRNA_6049 0.23 1.3
1,520,231 - 14417 mRNA_6049 0.24 1.3
1,520,271 + 14417 mRNA_6049 0.27 0.4
1,520,556 - 14417 mRNA_6049 0.47 0.8
1,520,815 + 14417 mRNA_6049 0.65 -0.2
1,520,964 - 14417 mRNA_6049 0.76 0.5
1,520,992 + 14417 mRNA_6049 0.78 -1.7
1,521,103 + 14417 mRNA_6049 0.85 -0.3
1,521,694 - -0.9
1,522,162 + 14418 mRNA_6050 0.27 -0.0