Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5989

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5989: 14357 - SUPERFAMILY--SSF52047, at 1392588 to 1397872 14357 mRNA_5990: 14358 - Hypothetical Protein, at 1398213 to 1398410 14358 mRNA_5991: 14359 - Hypothetical Protein, at 1398827 to 1400392 14359

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,391,680 - 1.8
1,392,122 + 1.0
1,392,145 + 0.7
1,392,279 - 1.2
1,392,285 + 0.2
1,392,301 + 0.1
1,392,417 + -0.4
1,392,418 - 0.3
1,392,439 + 0.5
1,392,458 + 0.1
1,392,466 + 1.2
1,392,519 + 0.2
1,392,719 + -0.1
1,392,825 - 0.4
1,392,886 + 0.3
1,393,005 - 0.1
1,393,022 + 0.1
1,393,044 - 0.4
1,393,072 - -0.3
1,393,111 - 0.8
1,393,119 - 14357 mRNA_5989 0.10 0.1
1,393,126 + 14357 mRNA_5989 0.10 -0.2
1,393,129 - 14357 mRNA_5989 0.10 0.3
1,393,129 - 14357 mRNA_5989 0.10 0.3
1,393,133 + 14357 mRNA_5989 0.10 0.0
1,393,138 + 14357 mRNA_5989 0.10 0.9
1,393,161 + 14357 mRNA_5989 0.11 0.3
1,393,174 - 14357 mRNA_5989 0.11 1.6
1,393,309 + 14357 mRNA_5989 0.14 -0.4
1,393,313 + 14357 mRNA_5989 0.14 0.2
1,393,344 - 14357 mRNA_5989 0.14 1.5
1,393,395 - 14357 mRNA_5989 0.15 1.6
1,393,570 - 14357 mRNA_5989 0.19 1.6
1,393,577 + 14357 mRNA_5989 0.19 0.7
1,393,864 + 14357 mRNA_5989 0.24 0.7
1,393,867 + 14357 mRNA_5989 0.24 -0.4
1,393,938 + 14357 mRNA_5989 0.26 0.3
1,393,970 + 14357 mRNA_5989 0.26 0.6
1,393,981 + 14357 mRNA_5989 0.26 -1.1
1,393,993 - 14357 mRNA_5989 0.27 0.7
1,393,996 + 14357 mRNA_5989 0.27 -0.1
1,394,008 - 14357 mRNA_5989 0.27 -0.2
1,394,017 + 14357 mRNA_5989 0.27 0.4
1,394,067 - 14357 mRNA_5989 0.28 0.2
1,394,197 - 14357 mRNA_5989 0.30 0.0
1,394,361 + 14357 mRNA_5989 0.34 0.2
1,394,444 + 14357 mRNA_5989 0.35 0.8
1,394,522 - 14357 mRNA_5989 0.37 0.6
1,394,565 - 14357 mRNA_5989 0.37 0.2
1,394,644 - 14357 mRNA_5989 0.39 0.8
1,394,653 + 14357 mRNA_5989 0.39 0.9
1,394,674 + 14357 mRNA_5989 0.39 0.5
1,394,786 + 14357 mRNA_5989 0.42 2.0
1,394,909 + 14357 mRNA_5989 0.44 0.3
1,395,031 + 14357 mRNA_5989 0.46 -0.1
1,395,084 - 14357 mRNA_5989 0.47 0.1
1,395,136 - 14357 mRNA_5989 0.48 1.6
1,395,141 + 14357 mRNA_5989 0.48 -0.1
1,395,159 - 14357 mRNA_5989 0.49 0.3
1,395,184 + 14357 mRNA_5989 0.49 0.7
1,395,187 - 14357 mRNA_5989 0.49 0.4
1,395,187 - 14357 mRNA_5989 0.49 0.3
1,395,193 - 14357 mRNA_5989 0.49 -0.0
1,395,501 - 14357 mRNA_5989 0.55 -0.2
1,395,625 - 14357 mRNA_5989 0.57 0.6
1,395,764 + 14357 mRNA_5989 0.60 0.2
1,395,800 - 14357 mRNA_5989 0.61 -0.1
1,395,803 + 14357 mRNA_5989 0.61 0.4
1,395,912 + 14357 mRNA_5989 0.63 -0.1
1,395,930 + 14357 mRNA_5989 0.63 0.9
1,396,059 - 14357 mRNA_5989 0.66 -0.8
1,396,062 - 14357 mRNA_5989 0.66 -0.1
1,396,075 + 14357 mRNA_5989 0.66 0.2
1,396,075 + 14357 mRNA_5989 0.66 0.5
1,396,076 - 14357 mRNA_5989 0.66 0.2
1,396,082 - 14357 mRNA_5989 0.66 0.5
1,396,209 - 14357 mRNA_5989 0.69 -0.7
1,396,328 - 14357 mRNA_5989 0.71 -0.4
1,396,484 - 14357 mRNA_5989 0.74 2.0
1,396,530 - 14357 mRNA_5989 0.75 -0.2
1,396,620 - 14357 mRNA_5989 0.76 -0.2
1,396,635 + 14357 mRNA_5989 0.77 0.2
1,396,812 + 14357 mRNA_5989 0.80 1.5
1,396,925 + 14357 mRNA_5989 0.82 0.6
1,397,097 + 14357 mRNA_5989 0.85 -0.6
1,397,112 + 14357 mRNA_5989 0.86 0.6
1,397,224 - 14357 mRNA_5989 0.88 -0.2
1,397,244 - 14357 mRNA_5989 0.88 3.2
1,397,367 + -0.4
1,397,374 + 0.3
1,397,492 + 0.5
1,397,658 + -0.7
1,397,672 - 0.6
1,397,679 + 0.4
1,397,724 - 0.4
1,397,823 - 0.1
1,397,826 + 0.2
1,397,982 - 0.1
1,398,070 + 0.2
1,398,253 - 14358 mRNA_5990 0.20 0.4
1,398,382 + 14358 mRNA_5990 0.85 0.7
1,398,406 + 1.3
1,398,520 - -1.2
1,398,569 + 0.9
1,398,571 - 0.1
1,398,572 + 0.5
1,398,578 - -0.5