Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5965

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5963: 14331 - Interpro F-box-like, at 1342059 to 1343538 14331 mRNA_5964: 14332 - Hypothetical Protein, at 1343767 to 1344081 14332 mRNA_5965: 14333 - Hypothetical Protein, at 1344159 to 1346250 14333 mRNA_5966: 14334 - KOG1950 Glycosyl transferase, family 8 - glycogenin, at 1346683 to 1347941 14334

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,343,174 - 14331 mRNA_5963 0.75 0.7
1,343,186 - 14331 mRNA_5963 0.76 0.3
1,343,194 - 14331 mRNA_5963 0.77 0.6
1,343,302 - 14331 mRNA_5963 0.84 1.7
1,343,327 - 14331 mRNA_5963 0.86 1.0
1,343,409 + -0.5
1,343,438 - 0.4
1,343,449 - -0.0
1,343,453 + 0.0
1,343,588 + 0.1
1,343,644 - 0.4
1,343,763 + 0.7
1,343,778 - 0.5
1,343,839 + 14332 mRNA_5964 0.23 0.4
1,343,876 - 14332 mRNA_5964 0.35 1.4
1,343,890 - 14332 mRNA_5964 0.39 0.1
1,343,900 + 14332 mRNA_5964 0.42 0.7
1,343,902 + 14332 mRNA_5964 0.43 0.4
1,343,996 + 14332 mRNA_5964 0.73 -0.0
1,344,009 - 14332 mRNA_5964 0.77 0.1
1,344,024 + 14332 mRNA_5964 0.82 -0.6
1,344,031 - 14332 mRNA_5964 0.84 0.8
1,344,043 + 14332 mRNA_5964 0.88 1.1
1,344,078 - 0.9
1,344,094 - -0.3
1,344,164 - 1.3
1,344,205 + 1.5
1,344,328 + -0.1
1,344,377 + 14333 mRNA_5965 0.10 0.6
1,344,588 - 14333 mRNA_5965 0.21 0.6
1,344,917 - 14333 mRNA_5965 0.36 0.7
1,345,016 - 14333 mRNA_5965 0.41 -0.1
1,345,023 - 14333 mRNA_5965 0.41 0.2
1,345,026 - 14333 mRNA_5965 0.41 0.1
1,345,031 + 14333 mRNA_5965 0.42 1.2
1,345,032 + 14333 mRNA_5965 0.42 -0.8
1,345,151 - 14333 mRNA_5965 0.47 0.2
1,345,426 - 14333 mRNA_5965 0.61 0.3
1,345,442 + 14333 mRNA_5965 0.61 1.2
1,345,636 + 14333 mRNA_5965 0.71 0.1
1,345,713 - 14333 mRNA_5965 0.74 1.5
1,345,718 + 14333 mRNA_5965 0.75 0.7
1,345,831 - 14333 mRNA_5965 0.80 0.5
1,345,999 - 14333 mRNA_5965 0.88 0.8
1,346,002 + 14333 mRNA_5965 0.88 0.4
1,346,005 + 14333 mRNA_5965 0.88 -0.3
1,346,007 + 14333 mRNA_5965 0.88 0.4
1,346,008 - 14333 mRNA_5965 0.88 1.0
1,346,029 + 14333 mRNA_5965 0.89 0.3
1,346,038 + 14333 mRNA_5965 0.90 0.6
1,346,160 - 0.4
1,346,169 - 0.4
1,346,179 + -1.7
1,346,194 + 1.2
1,346,309 + 0.1
1,346,321 - 0.6
1,346,322 + 1.6
1,346,330 - 0.3
1,346,357 - 0.2
1,346,455 - 0.8
1,346,488 - 0.0
1,346,490 + 1.3
1,346,492 + 0.0
1,346,495 + 0.4
1,346,501 - 0.6
1,346,503 + 0.0
1,346,510 + 0.7
1,346,510 - -0.0
1,346,511 + 0.4
1,346,516 + 0.1
1,346,551 - 0.0
1,346,552 - 0.1
1,346,557 - 1.6
1,346,558 + 0.3
1,346,560 + 0.2
1,346,581 + 0.1
1,346,582 - 0.6
1,346,583 - 0.6
1,346,589 - -0.1
1,346,590 + 0.1
1,346,590 + 0.1
1,346,592 + 0.8
1,346,595 - 0.2
1,346,596 - 0.5
1,346,598 - -0.2
1,346,600 - 1.3
1,346,609 - -0.4
1,346,610 - 0.1
1,346,612 + -0.2
1,346,617 - 0.2
1,346,623 + 0.1
1,346,624 + 0.2
1,346,626 + 0.4
1,346,628 + 0.3
1,346,628 - -0.9
1,346,646 - -0.1
1,346,750 - 0.1
1,346,774 + -0.0
1,346,786 + -0.6
1,346,801 - 1.4
1,346,951 + 14334 mRNA_5966 0.21 1.5
1,347,187 - 14334 mRNA_5966 0.40 0.0