Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5914

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5913: 14281 - K14455 GOT2 aspartate aminotransferase, mitochondrial, at 1230072 to 1231795 14281 mRNA_5914: 14282 - HMMPfam-Nuclear protein Es2-PF09751, at 1232293 to 1234588 14282 mRNA_5915: 14283 - HMMPfam-Tannase and feruloyl esterase-PF07519,SUPERFAMILY--SSF53474, at 1235017 to 1236924 14283

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,231,359 - 14281 mRNA_5913 0.75 -0.1
1,231,395 + 14281 mRNA_5913 0.77 -0.1
1,231,415 - 14281 mRNA_5913 0.78 1.6
1,231,542 - 14281 mRNA_5913 0.85 0.2
1,231,686 - 0.3
1,231,694 - 0.4
1,231,817 + -0.8
1,231,818 - 1.2
1,231,839 - 0.4
1,231,886 - 0.5
1,231,972 - 0.2
1,231,974 - 0.3
1,231,976 - -0.6
1,231,978 - 0.2
1,231,984 - 0.2
1,231,987 + 0.3
1,231,999 + -0.8
1,232,001 + -0.3
1,232,025 - 0.2
1,232,049 - -0.5
1,232,110 - -0.1
1,232,116 - 0.4
1,232,152 + -0.3
1,232,157 - -0.5
1,232,173 + -0.8
1,232,309 + 0.1
1,232,498 + 1.3
1,232,605 + 14282 mRNA_5914 0.14 0.1
1,233,617 + 14282 mRNA_5914 0.58 0.7
1,233,760 - 14282 mRNA_5914 0.64 1.5
1,233,762 + 14282 mRNA_5914 0.64 1.5
1,233,909 + 14282 mRNA_5914 0.70 0.1
1,234,602 - -0.3
1,234,640 - -0.1
1,234,642 + 0.6
1,234,662 - 0.6
1,234,763 + 0.6
1,234,777 - 2.0
1,235,077 + 0.3
1,235,235 + 14283 mRNA_5915 0.11 0.6
1,235,495 + 14283 mRNA_5915 0.25 0.9
1,235,532 - 14283 mRNA_5915 0.27 0.4
1,235,561 - 14283 mRNA_5915 0.29 -1.3