Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5888

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5887: 14255 - Hypothetical Protein, at 1170468 to 1171652 14255 mRNA_5888: 14256 - K00688 PYG, glgP glycogen phosphorylase, at 1171973 to 1175579 14256 mRNA_5889: 14257 - K02977 RP-S27Ae, RPS27A small subunit ribosomal protein S27Ae, at 1176475 to 1177214 14257

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,171,046 - 14255 mRNA_5887 0.49 1.4
1,171,443 + 14255 mRNA_5887 0.82 1.3
1,171,571 - 0.3
1,171,621 + 0.3
1,171,723 - -0.3
1,171,739 + 0.6
1,171,749 - 0.8
1,171,758 + -0.1
1,171,857 - -0.1
1,171,879 + -1.2
1,171,884 + 0.2
1,171,886 + 0.3
1,172,059 + 0.6
1,172,187 - 2.6
1,172,187 + 1.6
1,172,202 - -0.3
1,172,202 - 0.0
1,172,204 - -0.1
1,172,209 + 1.8
1,172,355 + 14256 mRNA_5888 0.11 -0.5
1,172,383 + 14256 mRNA_5888 0.11 0.9
1,172,403 + 14256 mRNA_5888 0.12 0.6
1,172,538 - 14256 mRNA_5888 0.16 -0.2
1,172,684 + 14256 mRNA_5888 0.20 -0.4
1,172,769 - 14256 mRNA_5888 0.22 0.2
1,173,254 + 14256 mRNA_5888 0.36 0.2
1,173,265 - 14256 mRNA_5888 0.36 0.3
1,173,371 - 14256 mRNA_5888 0.39 0.4
1,173,694 - 14256 mRNA_5888 0.48 1.2
1,173,799 - 14256 mRNA_5888 0.51 0.1
1,173,812 + 14256 mRNA_5888 0.51 2.3
1,173,824 + 14256 mRNA_5888 0.51 0.2
1,173,991 + 14256 mRNA_5888 0.56 -0.3
1,174,447 + 14256 mRNA_5888 0.69 -0.2
1,174,538 - 14256 mRNA_5888 0.71 1.0
1,174,744 + 14256 mRNA_5888 0.77 0.2
1,175,153 - 14256 mRNA_5888 0.88 -0.5
1,175,300 + 0.3
1,175,864 - -0.1
1,175,877 - -0.4
1,175,884 - 0.2
1,175,890 + 0.7
1,175,898 + 0.2
1,175,920 + 0.7
1,175,982 + 0.0
1,176,051 - -0.4
1,176,192 - 0.6
1,176,219 + 0.6
1,176,340 + 0.2