Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5877

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5876: 14244 - K14537 NUG2, GNL2 nuclear GTP-binding protein, at 1141307 to 1144033 14244 mRNA_5877: 14245 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 1144379 to 1146733 14245 mRNA_5878: 14246 - KOG4210 Nuclear localization sequence binding protein, at 1146916 to 1148820 14246

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,144,043 - 0.5
1,144,067 - 0.5
1,144,107 - 0.4
1,144,171 - 0.5
1,144,202 - 0.4
1,144,207 + 0.3
1,144,216 - 0.4
1,144,217 + 0.3
1,144,217 + -0.7
1,144,223 + 1.0
1,144,231 - -0.3
1,144,333 + 0.7
1,144,352 - 0.4
1,144,361 - 0.4
1,144,362 - 0.8
1,144,371 - 0.4
1,144,378 + 0.1
1,144,405 + 0.6
1,144,500 - 0.8
1,144,513 + 0.0
1,144,518 + 0.5
1,144,536 - 0.0
1,144,543 - 0.4
1,144,560 - 0.8
1,144,661 + 14245 mRNA_5877 0.12 0.7
1,144,696 + 14245 mRNA_5877 0.13 -0.6
1,144,699 - 14245 mRNA_5877 0.14 0.1
1,144,703 + 14245 mRNA_5877 0.14 1.3
1,144,839 - 14245 mRNA_5877 0.20 0.4
1,144,841 + 14245 mRNA_5877 0.20 -0.3
1,145,004 + 14245 mRNA_5877 0.27 0.0
1,145,117 + 14245 mRNA_5877 0.31 0.3
1,145,155 + 14245 mRNA_5877 0.33 1.1
1,145,237 - 14245 mRNA_5877 0.36 0.2
1,145,284 + 14245 mRNA_5877 0.38 -0.2
1,145,326 - 14245 mRNA_5877 0.40 -0.0
1,145,466 - 14245 mRNA_5877 0.46 0.3
1,145,472 + 14245 mRNA_5877 0.46 -1.0
1,145,531 + 14245 mRNA_5877 0.49 -0.0
1,145,597 - 14245 mRNA_5877 0.52 0.3
1,145,690 - 14245 mRNA_5877 0.56 0.3
1,145,969 - 14245 mRNA_5877 0.68 0.7
1,146,096 + 14245 mRNA_5877 0.73 0.1
1,146,142 + 14245 mRNA_5877 0.75 -0.2
1,146,313 - 14245 mRNA_5877 0.82 0.4
1,146,388 + 14245 mRNA_5877 0.85 -0.1
1,146,448 + 14245 mRNA_5877 0.88 0.4
1,146,523 - 0.2
1,146,654 + -1.5
1,146,668 - -0.0
1,146,703 + 1.1
1,146,722 - 0.3
1,146,847 + 1.1
1,147,262 - 14246 mRNA_5878 0.18 1.3
1,147,574 - 14246 mRNA_5878 0.35 -1.5