Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5872

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5871: 14239 - HMMPfam-zinc finger of C3HC4-type, RING-PF15227,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 1127844 to 1131373 14239 mRNA_5872: 14240 - HMMPfam-Pleckstrin homology domain-PF15404,SMART-Pleckstrin homology domain.-SM00233, at 1131493 to 1135652 14240 mRNA_5873: 14241 - K00761 upp, UPRT uracil phosphoribosyltransferase, at 1136080 to 1137305 14241

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,130,731 - 14239 mRNA_5871 0.82 -0.2
1,130,881 + 14239 mRNA_5871 0.86 1.3
1,130,888 - 14239 mRNA_5871 0.86 -1.2
1,131,032 + 0.7
1,131,043 + 0.5
1,131,444 - 0.9
1,131,444 - 0.5
1,131,508 + -0.1
1,131,781 - 0.7
1,131,801 + 0.3
1,131,908 - 1.5
1,131,940 + 14240 mRNA_5872 0.11 0.4
1,131,941 + 14240 mRNA_5872 0.11 -0.3
1,132,640 - 14240 mRNA_5872 0.28 1.1
1,132,645 - 14240 mRNA_5872 0.28 1.1
1,132,944 - 14240 mRNA_5872 0.35 0.1
1,133,257 + 14240 mRNA_5872 0.42 1.3
1,133,809 - 14240 mRNA_5872 0.56 0.9
1,134,159 + 14240 mRNA_5872 0.64 0.1
1,134,263 - 14240 mRNA_5872 0.67 1.1
1,134,397 + 14240 mRNA_5872 0.70 0.7
1,134,874 - 14240 mRNA_5872 0.81 0.2
1,135,141 - 14240 mRNA_5872 0.88 0.5
1,135,310 + -0.2
1,135,316 + 0.2
1,135,432 + 1.5
1,135,731 - 0.4
1,135,840 - 0.3
1,135,863 - 0.5
1,135,881 - -0.2
1,135,893 - 0.3
1,136,040 - -0.2
1,136,040 + 0.1
1,136,203 - 14241 mRNA_5873 0.10 -0.0
1,136,204 + 14241 mRNA_5873 0.10 -0.2