Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5812

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5811: 14179 - K01599 hemE, UROD uroporphyrinogen decarboxylase, at 992194 to 993567 14179 mRNA_5812: 14180 - K02831 RAD53 ser/thr/tyr protein kinase RAD53, at 993823 to 996800 14180 mRNA_5813: 14181 - K15340 DCLRE1A, SNM1A, PSO2 DNA cross-link repair 1A protein, at 996990 to 1000538 14181

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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993,598 - 1.6
993,609 - 0.7
993,615 - 0.5
993,711 - -1.5
993,781 - 1.9
993,785 - 0.8
993,901 + 0.2
993,902 - 0.1
993,906 - 0.3
993,925 - -0.0
994,060 + -0.1
994,100 + 0.0
994,138 + 14180 mRNA_5812 0.11 -0.2
994,208 - 14180 mRNA_5812 0.13 -0.1
994,512 - 14180 mRNA_5812 0.23 0.5
994,643 + 14180 mRNA_5812 0.28 -0.0
994,773 - 14180 mRNA_5812 0.32 0.5
994,787 + 14180 mRNA_5812 0.32 2.1
994,801 + 14180 mRNA_5812 0.33 0.6
995,086 - 14180 mRNA_5812 0.42 -0.2
995,183 - 14180 mRNA_5812 0.46 0.6
995,513 - 14180 mRNA_5812 0.57 0.2
995,532 + 14180 mRNA_5812 0.57 -0.1
995,952 + 14180 mRNA_5812 0.71 0.1
996,093 + 14180 mRNA_5812 0.76 0.1
996,911 - -0.7
996,947 - -0.1
996,957 - 0.0
996,964 - 0.9
996,967 - -1.3
997,279 - -0.3
997,297 + -1.2
997,313 - 0.4
997,429 - 14181 mRNA_5813 0.12 -0.2
997,536 + 14181 mRNA_5813 0.15 2.3