Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5704

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5704: 14072 - KOG2483 Upstream transcription factor 2/L-myc-2 protein, at 728026 to 730424 14072 mRNA_5705: 14073 - HMMPfam-Cysteine-rich secretory protein family-PF00188,SUPERFAMILY--SSF55797, at 731059 to 731970 14073

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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727,144 - 1.4
727,162 + 1.1
727,230 + 1.5
727,259 - 1.3
727,275 - 0.5
727,289 - 1.1
727,295 + 1.6
727,317 - 0.9
727,318 + 0.1
727,319 + 0.3
727,338 + 1.1
727,348 - 0.4
727,349 + 0.3
727,359 + 0.4
727,468 - 0.7
727,473 + 0.6
727,483 - 0.1
727,504 + -0.1
727,518 - 0.6
727,530 + -0.9
727,538 + 1.1
727,608 - -1.0
727,696 - -0.0
727,697 - 0.3
727,728 + 0.2
727,736 + 0.2
727,745 + 0.3
727,749 + -0.6
727,866 - 0.7
727,875 + -0.2
727,891 + 0.7
727,892 - 0.2
727,903 - 0.2
728,037 - -0.2
728,041 + 0.5
728,349 + 14072 mRNA_5704 0.13 0.3
729,218 + 14072 mRNA_5704 0.50 0.4
729,515 + 14072 mRNA_5704 0.62 0.6
729,699 - 14072 mRNA_5704 0.70 -0.5
729,785 - 14072 mRNA_5704 0.73 -0.9
729,802 + 14072 mRNA_5704 0.74 -0.4
729,822 - 14072 mRNA_5704 0.75 0.6
730,270 - 0.2
730,321 - 1.0
730,477 - 1.1
730,570 - 0.2
730,666 - 0.6
730,720 + -0.3
730,732 + -0.4
730,750 + 0.4
730,890 + 0.7
730,902 + 0.3
730,911 - 0.7
731,155 - 14073 mRNA_5705 0.11 1.6
731,181 - 14073 mRNA_5705 0.13 -0.0
731,212 + 14073 mRNA_5705 0.17 -0.2