Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5670

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5669: 14037 - K01736 aroC chorismate synthase, at 651115 to 652658 14037 mRNA_5670: 14038 - K18995 DHX29 ATP-dependent RNA helicase DHX29, at 653055 to 658546 14038 mRNA_5671: 14039 - K11675 IES1 Ino eighty subunit 1, at 659400 to 661417 14039

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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652,800 + 0.4
652,822 + 1.0
652,840 + 0.9
652,931 + 0.9
652,934 - -0.9
652,972 + 0.9
652,973 + 0.4
653,253 + 0.8
653,683 - 14038 mRNA_5670 0.11 -0.1
653,921 - 14038 mRNA_5670 0.16 1.2
654,279 + 14038 mRNA_5670 0.22 1.5
654,285 - 14038 mRNA_5670 0.22 0.7
654,429 - 14038 mRNA_5670 0.25 -0.3
654,576 - 14038 mRNA_5670 0.28 1.0
655,105 + 14038 mRNA_5670 0.37 0.1
655,694 + 14038 mRNA_5670 0.48 0.6
655,826 + 14038 mRNA_5670 0.50 1.0
655,873 - 14038 mRNA_5670 0.51 0.0
655,930 + 14038 mRNA_5670 0.52 -0.0
656,098 + 14038 mRNA_5670 0.55 1.7
656,107 - 14038 mRNA_5670 0.56 0.6
656,552 - 14038 mRNA_5670 0.64 -0.6
656,842 + 14038 mRNA_5670 0.69 -0.2
656,882 + 14038 mRNA_5670 0.70 0.5
656,894 - 14038 mRNA_5670 0.70 1.5
657,150 - 14038 mRNA_5670 0.75 0.3
657,725 + 14038 mRNA_5670 0.85 -0.1
657,736 + 14038 mRNA_5670 0.85 0.9
658,023 + 0.8
658,311 + 1.2
658,605 + -0.1
658,606 + 0.1
658,612 - 0.5
659,042 - 0.8
659,042 - -0.1
659,048 - 1.6
659,051 + -0.2
659,183 + 0.4
659,342 - 0.5
659,349 + 2.1
659,503 + -0.1