Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5653

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5652: 14020 - KOG4443 Putative transcription factor HALR/MLL3, involved in embryonic development, at 602133 to 602528 14020 mRNA_5653: 14021 - Hypothetical Protein, at 603450 to 604586 14021 mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605186 to 607588 14022

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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602,582 - 0.4
602,618 + 0.5
603,372 + 0.8
603,609 + 14021 mRNA_5653 0.14 2.0
603,714 + 14021 mRNA_5653 0.23 0.6
603,834 + 14021 mRNA_5653 0.34 0.4
603,992 + 14021 mRNA_5653 0.48 0.6
603,997 + 14021 mRNA_5653 0.48 0.7
604,075 - 14021 mRNA_5653 0.55 -0.1
604,398 + 14021 mRNA_5653 0.83 -0.1
604,546 - 1.0
604,660 - 2.6
604,709 - -0.3
604,809 + 0.2
604,811 + -0.2
604,813 - 1.0
604,850 - 1.5
604,891 - 1.0
604,893 + -0.5
604,897 - -0.6
604,900 + 0.6
604,915 + 0.7
604,916 + -0.0
604,928 - 0.2
604,928 - 0.7
604,928 - 1.0
604,934 - -0.3
604,945 - 0.6
604,987 - 0.8
604,988 - 0.0
605,001 + -0.2
605,005 - 0.4
605,005 + -0.1
605,178 - 0.1
605,456 + 14022 mRNA_5654 0.11 -0.4
605,569 + 14022 mRNA_5654 0.16 1.0