Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5646

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5645: 14013 - BLAST putative alkaline phosphatase [Phaeomoniella chlamydo..., at 584713 to 586254 14013 mRNA_5646: 14014 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 586465 to 587964 14014 mRNA_5647: 14015 - KOG4719 Nuclear pore complex protein, at 588479 to 592654 14015

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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585,542 - 14013 mRNA_5645 0.54 1.4
585,817 + 14013 mRNA_5645 0.72 -0.3
585,839 - 14013 mRNA_5645 0.73 0.1
585,844 + 14013 mRNA_5645 0.73 -1.1
585,872 + 14013 mRNA_5645 0.75 0.0
586,004 - 14013 mRNA_5645 0.84 0.3
586,166 + -0.3
586,166 + 0.4
586,167 + 0.1
586,283 - -0.2
586,304 - 1.0
586,310 - -0.2
586,316 + 0.4
586,325 + -1.4
586,332 + -0.2
586,333 + 0.8
586,333 - 1.3
586,333 - 0.5
586,354 + 0.1
586,381 - 0.3
586,400 - -0.5
586,407 + 1.2
586,413 + 0.3
586,428 + -0.1
586,435 + -0.1
586,435 + 0.3
586,435 + 1.1
586,442 - 0.2
586,453 + -0.1
586,457 + 0.6
586,464 + 0.1
586,464 - 0.5
586,601 + -0.2
586,609 - 0.4
586,638 + 14014 mRNA_5646 0.12 0.3
586,877 + 14014 mRNA_5646 0.27 0.0
586,906 + 14014 mRNA_5646 0.29 0.9
587,037 - 14014 mRNA_5646 0.38 0.8
587,808 + 14014 mRNA_5646 0.90 -0.6
587,882 - -0.3
587,908 + 0.4
587,931 - 0.8
588,054 + -0.0
588,057 - 0.6
588,057 - 0.2
588,058 + 0.7
588,101 + 1.7
588,106 + 0.5
588,107 + 0.3
588,121 + -0.8
588,213 + 0.1
588,250 + 0.3
588,548 - -0.0
588,661 - -0.5
588,804 - -0.6
588,824 + 0.2