Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5631

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5630: 13998 - HMMPfam-SUR7/PalI family-PF06687, at 549852 to 551893 13998 mRNA_5631: 13999 - KOG4197 FOG PPR repeat, at 552322 to 556680 13999 mRNA_5632: 14000 - Hypothetical Protein, at 557069 to 557641 14000

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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551,479 + 13998 mRNA_5630 0.80 -0.1
551,779 - -0.4
551,793 + 0.2
551,808 + 2.4
551,840 + 0.4
551,842 - 0.1
551,942 - -0.3
551,945 - -0.7
551,957 - 0.1
551,961 + 0.2
551,963 - 0.1
551,964 + 0.8
551,966 + 0.1
551,971 + 0.3
551,977 + -0.0
551,979 + 0.9
551,979 + -0.2
552,118 + -0.2
552,233 + 0.9
552,418 + 0.7
552,994 - 13999 mRNA_5631 0.15 0.5
553,584 - 13999 mRNA_5631 0.29 1.0
553,952 - 13999 mRNA_5631 0.37 -2.4
554,057 - 13999 mRNA_5631 0.40 1.1
554,120 - 13999 mRNA_5631 0.41 -0.1
554,121 + 13999 mRNA_5631 0.41 0.5
554,414 - 13999 mRNA_5631 0.48 0.2
554,484 - 13999 mRNA_5631 0.50 0.3
554,590 - 13999 mRNA_5631 0.52 0.7
554,645 + 13999 mRNA_5631 0.53 -0.0
554,978 - 13999 mRNA_5631 0.61 0.2
555,031 - 13999 mRNA_5631 0.62 -0.1
555,146 + 13999 mRNA_5631 0.65 -0.9
555,355 + 13999 mRNA_5631 0.70 0.6
555,667 - 13999 mRNA_5631 0.77 -0.2
555,668 - 13999 mRNA_5631 0.77 -0.9
555,802 + 13999 mRNA_5631 0.80 1.1
555,803 - 13999 mRNA_5631 0.80 -0.7
556,438 - -0.4
556,528 - 0.6
556,568 + 0.7
556,658 - 1.8
556,685 + -0.1
556,831 - 0.4
556,949 + 0.7
557,273 - 14000 mRNA_5632 0.36 0.0
557,280 - 14000 mRNA_5632 0.37 0.2
557,288 + 14000 mRNA_5632 0.38 0.1
557,293 + 14000 mRNA_5632 0.39 -0.4
557,293 + 14000 mRNA_5632 0.39 -0.4
557,300 + 14000 mRNA_5632 0.40 1.1
557,419 + 14000 mRNA_5632 0.61 -0.1
557,437 + 14000 mRNA_5632 0.64 0.4
557,446 + 14000 mRNA_5632 0.66 1.1