Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5593

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5592: 13960 - HMMPfam-Alcohol acetyltransferase-PF07247,SUPERFAMILY--SSF52777, at 461599 to 463064 13960 mRNA_5593: 13961 - K00905 BCKDK [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase, at 463128 to 464888 13961 mRNA_5594: 13962 - K07943 ARL2 ADP-ribosylation factor-like protein 2, at 465150 to 466141 13962

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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462,286 - 13960 mRNA_5592 0.47 0.7
462,330 + 13960 mRNA_5592 0.50 -0.2
462,577 - 13960 mRNA_5592 0.67 0.2
462,587 - 13960 mRNA_5592 0.67 0.0
463,027 + 0.5
463,145 - 0.2
463,458 - 13961 mRNA_5593 0.19 0.6
463,588 + 13961 mRNA_5593 0.26 -0.4
463,597 + 13961 mRNA_5593 0.27 -1.4
463,734 - 13961 mRNA_5593 0.34 0.1
463,875 + 13961 mRNA_5593 0.42 0.6
464,044 - 13961 mRNA_5593 0.52 -0.4
464,061 + 13961 mRNA_5593 0.53 0.1
464,184 + 13961 mRNA_5593 0.60 0.3
464,274 + 13961 mRNA_5593 0.65 0.4
464,286 + 13961 mRNA_5593 0.66 1.0
464,289 - 13961 mRNA_5593 0.66 0.6
464,345 - 13961 mRNA_5593 0.69 1.9
464,609 + 13961 mRNA_5593 0.84 0.3
464,645 + 13961 mRNA_5593 0.86 0.2
464,779 - -0.5
464,800 + -0.1
464,898 + -0.5
464,917 - -1.2
464,925 + -0.0
464,926 + 0.6
464,928 + 0.0
464,931 - 0.6
464,935 - 0.5
464,952 - 0.3
465,074 - 0.6
465,084 + -0.5
465,087 + -0.8
465,098 + 0.5
465,217 + 0.0
465,232 + 1.7