Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5579

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5579: 13947 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 422272 to 423518 13947 mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424310 to 425729 13948

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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421,329 + 0.2
421,353 - -0.5
421,468 - 0.8
421,473 + 0.4
421,483 - 0.3
421,484 - 0.3
421,486 - -1.2
421,489 - 1.3
421,489 + -0.1
421,503 + 0.4
421,508 + 0.2
421,523 - -0.1
421,525 - 0.6
421,530 + 1.0
421,530 + 1.6
421,636 + 0.9
421,663 - -0.0
421,822 - 0.0
421,826 + 0.0
421,834 + 0.5
421,845 + -0.1
422,146 + 0.7
422,525 - 13947 mRNA_5579 0.20 -2.3
422,606 + 13947 mRNA_5579 0.27 -0.1
422,825 - 13947 mRNA_5579 0.44 1.8
422,870 + 13947 mRNA_5579 0.48 0.7
422,994 - 13947 mRNA_5579 0.58 0.2
423,020 + 13947 mRNA_5579 0.60 -0.2
423,152 + 13947 mRNA_5579 0.71 -0.2
423,433 + 0.9
423,433 + 0.3
423,474 - 0.6
423,475 - 0.2
423,634 + 0.6
423,741 - 0.1
423,761 + 0.5
423,761 + 2.1
423,771 + 0.1