Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5562

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5561: 13929 - Hypothetical Protein, at 382634 to 383572 13929 mRNA_5562: 13930 - KOG0257 Kynurenine aminotransferase, glutamine transaminase K, at 383773 to 385239 13930 mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385624 to 387371 13931

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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382,902 - 13929 mRNA_5561 0.29 -0.2
383,142 - 13929 mRNA_5561 0.54 1.0
383,376 + 13929 mRNA_5561 0.79 -0.1
383,408 - 13929 mRNA_5561 0.82 1.2
383,538 + 0.5
383,568 - 0.0
383,579 + 0.2
383,626 - 0.4
383,642 - -0.5
383,694 + -0.4
383,993 + 13930 mRNA_5562 0.15 1.4
384,002 - 13930 mRNA_5562 0.16 1.2
384,252 + 13930 mRNA_5562 0.33 1.7
384,405 + 13930 mRNA_5562 0.43 0.6
384,552 + 13930 mRNA_5562 0.53 0.9
384,555 - 13930 mRNA_5562 0.53 -0.6
384,821 + 13930 mRNA_5562 0.71 0.3
384,822 - 13930 mRNA_5562 0.72 -1.2
384,857 + 13930 mRNA_5562 0.74 -0.1
384,862 + 13930 mRNA_5562 0.74 0.9
384,866 + 13930 mRNA_5562 0.75 -0.5
385,009 - 13930 mRNA_5562 0.84 0.1
385,020 + 13930 mRNA_5562 0.85 -1.9
385,124 - -0.1
385,154 + 1.0
385,164 - -0.2
385,278 - 1.0
385,298 + 0.3
385,304 - 1.1
385,304 + 0.2
385,314 + -1.0
385,464 - 0.2
385,470 - 0.8