Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5551

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5550: 13918 - K09424 REB1 Myb-like DNA-binding protein REB1, at 353365 to 355997 13918 mRNA_5551: 13919 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 356341 to 358990 13919 mRNA_5552: 13920 - K03360 GRR1 F-box and leucine-rich repeat protein GRR1, at 359863 to 362993 13920

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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356,186 + -0.0
356,263 - 0.5
356,278 - 0.4
356,638 + 13919 mRNA_5551 0.11 -0.6
356,649 - 13919 mRNA_5551 0.12 0.5
356,914 + 13919 mRNA_5551 0.22 0.3
357,061 - 13919 mRNA_5551 0.27 -1.1
357,191 + 13919 mRNA_5551 0.32 0.2
357,220 - 13919 mRNA_5551 0.33 0.4
357,499 + 13919 mRNA_5551 0.44 -0.4
357,575 + 13919 mRNA_5551 0.47 -0.6
357,740 - 13919 mRNA_5551 0.53 1.0
358,216 + 13919 mRNA_5551 0.71 -0.1
358,223 - 13919 mRNA_5551 0.71 1.1
358,902 + 0.5
358,948 + 0.3
359,030 - 0.3
359,039 - -0.6
359,049 - 1.2
359,056 - 2.0
359,069 + -1.1
359,121 - -0.1
359,207 - 1.2
359,213 - -0.9
359,223 - 0.1
359,332 - 0.2
359,459 - -0.4
359,479 + -0.0
359,609 + 0.9
359,627 + 1.2
359,627 - 2.2
359,771 + 0.6