Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5543

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5542: 13910 - Hypothetical Protein, at 336976 to 338321 13910 mRNA_5543: 13911 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 338637 to 339590 13911 mRNA_5544: 13912 - Hypothetical Protein, at 340231 to 341133 13912

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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337,866 - 13910 mRNA_5542 0.66 0.0
337,883 + 13910 mRNA_5542 0.67 0.1
338,309 + 0.2
338,315 - 0.3
338,320 - -1.1
338,330 + 0.1
338,339 + 0.9
338,342 + 0.1
338,346 + 0.3
338,480 - 0.6
338,488 - 0.3
338,490 - 0.5
338,894 - 13911 mRNA_5543 0.27 0.7
339,031 - 13911 mRNA_5543 0.41 2.3
339,220 + 13911 mRNA_5543 0.61 0.0
339,629 - 0.9
339,636 - 0.9
339,650 + -0.1
339,677 + 1.3
339,765 - 0.6
339,786 + -0.1
339,796 - 0.2
339,802 + 1.6
339,806 + 0.6
339,815 + 0.2
339,871 - 0.5
339,878 + 0.2
339,897 + 0.2
339,963 - 1.6
339,975 + 0.8
339,986 + 0.4
340,003 + 1.0
340,003 - 0.5
340,084 - 0.3
340,125 - 0.5
340,233 + -0.2
340,234 - -0.2
340,236 + 0.8
340,243 - -0.2
340,380 + 13912 mRNA_5544 0.17 0.3
340,528 + 13912 mRNA_5544 0.33 1.0
340,551 + 13912 mRNA_5544 0.35 -1.4