Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5434

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5433: 13801 - BLAST UPF0658 Golgi apparatus membrane protein [Termitomyce..., at 87517 to 89164 13801 mRNA_5434: 13802 - KOG2852 Possible oxidoreductase, at 89359 to 90914 13802 mRNA_5435: 13803 - Hypothetical Protein, at 91032 to 92817 13803

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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88,454 + 13801 mRNA_5433 0.57 0.3
88,462 + 13801 mRNA_5433 0.57 -0.7
88,622 + 13801 mRNA_5433 0.67 0.6
88,760 - 13801 mRNA_5433 0.75 1.1
88,782 - 13801 mRNA_5433 0.77 -0.4
88,851 + 13801 mRNA_5433 0.81 0.3
88,884 - 13801 mRNA_5433 0.83 -0.5
88,963 - 13801 mRNA_5433 0.88 1.0
89,190 + 0.0
89,469 + -0.2
89,620 + 13802 mRNA_5434 0.17 1.5
89,761 + 13802 mRNA_5434 0.26 0.5
89,768 + 13802 mRNA_5434 0.26 0.0
89,906 - 13802 mRNA_5434 0.35 0.4
90,478 + 13802 mRNA_5434 0.72 -0.8
90,582 - 13802 mRNA_5434 0.79 0.1
90,709 - 13802 mRNA_5434 0.87 2.0
90,798 - -0.3
91,380 + 13803 mRNA_5435 0.19 -0.1
91,467 + 13803 mRNA_5435 0.24 0.3
91,821 - 13803 mRNA_5435 0.44 0.1