Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5400

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11684 to 12574 13767 mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13151 to 15531 13768 mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15776 to 16734 13769

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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12,242 + 13767 mRNA_5399 0.63 1.0
12,364 + 13767 mRNA_5399 0.76 -0.5
12,367 - 13767 mRNA_5399 0.77 -0.8
12,483 - 13767 mRNA_5399 0.90 0.0
12,518 + -0.6
12,615 + 0.6
12,815 + -0.0
12,828 + 1.5
13,061 - 0.4
13,121 + 1.2
13,248 + -0.2
13,534 - 13768 mRNA_5400 0.16 1.6
13,562 + 13768 mRNA_5400 0.17 0.9
13,834 - 13768 mRNA_5400 0.29 -0.5
14,177 - 13768 mRNA_5400 0.43 0.2
14,229 + 13768 mRNA_5400 0.45 0.3
14,297 + 13768 mRNA_5400 0.48 0.8
14,399 - 13768 mRNA_5400 0.52 -1.6
14,421 + 13768 mRNA_5400 0.53 0.6
14,427 + 13768 mRNA_5400 0.54 0.4
14,427 - 13768 mRNA_5400 0.54 0.4
14,681 - 13768 mRNA_5400 0.64 -0.1
14,790 + 13768 mRNA_5400 0.69 -1.0
14,898 + 13768 mRNA_5400 0.73 -0.0
15,102 - 13768 mRNA_5400 0.82 -0.1
15,148 + 13768 mRNA_5400 0.84 0.3
15,278 + 13768 mRNA_5400 0.89 -0.9
15,309 + 0.3
15,403 + -1.6
15,419 + 1.8
15,456 + 0.4
15,589 + -0.4
15,592 - -0.8
15,594 - 0.7
15,598 + 1.0
15,598 + 0.9
15,604 - 0.5
15,608 + 0.1
15,611 + -0.5
15,613 - -0.1
15,616 + -0.1
15,617 - 0.4
15,622 + 0.0
15,630 + 0.8
15,642 - 1.5
15,647 - 0.5
15,676 - 0.1
15,680 + -0.1
15,714 + 0.4
15,789 + 0.9
15,834 + 0.4
16,094 + 13769 mRNA_5401 0.33 -2.1
16,273 + 13769 mRNA_5401 0.52 0.9
16,357 + 13769 mRNA_5401 0.61 0.1