Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5399

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5398: 13766 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 8077 to 11128 13766 mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11684 to 12574 13767 mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13151 to 15531 13768

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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10,713 - 13766 mRNA_5398 0.86 0.3
10,749 + 13766 mRNA_5398 0.88 0.2
10,821 + 13766 mRNA_5398 0.90 1.5
10,853 + -0.2
10,874 + 0.1
10,879 + 1.0
10,972 - 0.3
10,973 + 0.2
11,196 + -0.3
11,200 - 1.7
11,291 - 0.0
11,429 + 1.2
11,435 - -0.1
11,447 + 0.0
11,451 + 1.0
11,466 - -1.1
11,467 + 0.3
11,467 + 2.6
11,472 + 0.1
11,488 + 1.9
11,496 + 0.4
11,641 + 1.2
11,663 + 1.1
11,679 + -0.6
11,681 - -0.6
11,681 + 0.3
11,793 - 13767 mRNA_5399 0.12 1.1
11,863 - 13767 mRNA_5399 0.20 0.0
11,937 - 13767 mRNA_5399 0.28 0.1
11,938 - 13767 mRNA_5399 0.29 -0.9
12,242 + 13767 mRNA_5399 0.63 1.0
12,364 + 13767 mRNA_5399 0.76 -0.5
12,367 - 13767 mRNA_5399 0.77 -0.8
12,483 - 13767 mRNA_5399 0.90 0.0
12,518 + -0.6
12,615 + 0.6
12,815 + -0.0
12,828 + 1.5
13,061 - 0.4
13,121 + 1.2
13,248 + -0.2
13,534 - 13768 mRNA_5400 0.16 1.6
13,562 + 13768 mRNA_5400 0.17 0.9