Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5340

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491578 to 492823 13707 mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493002 to 494592 13708 mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495239 to 496655 13709

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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492,907 + 0.7
492,917 - -0.7
492,949 + 1.8
493,042 - 0.3
493,193 - 13708 mRNA_5340 0.12 0.5
493,198 + 13708 mRNA_5340 0.12 -0.5
493,208 + 13708 mRNA_5340 0.13 0.7
493,317 - 13708 mRNA_5340 0.20 -0.2
493,505 - 13708 mRNA_5340 0.32 1.1
493,601 - 13708 mRNA_5340 0.38 0.5
493,739 - 13708 mRNA_5340 0.46 -0.0
493,918 + 13708 mRNA_5340 0.58 1.0
493,919 - 13708 mRNA_5340 0.58 0.2
494,047 + 13708 mRNA_5340 0.66 1.2
494,353 - 13708 mRNA_5340 0.85 0.3
494,496 - 0.5
494,503 + -0.1
494,506 - -0.1
494,666 - 0.5
494,693 - 1.0
494,698 + 0.4
494,787 + 0.5
494,790 + -1.1
494,799 + 1.2
494,805 - -0.1
494,818 + -0.0
494,820 - -0.3
494,820 - -0.4
494,843 + 0.1
494,893 + 0.8
494,933 - 1.6
494,967 + 0.2
494,981 - 0.1
495,105 - 0.0
495,290 + 3.2
495,377 - 0.7
495,448 - 13709 mRNA_5341 0.15 0.5
495,464 + 13709 mRNA_5341 0.16 0.1