Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5330

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5330: 13698 - BLAST ZYRO0C04598p [Zygosaccharomyces rouxii], at 471272 to 473464 13698 mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473951 to 475290 13699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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470,875 + 2.8
470,877 - 1.0
470,879 + -0.4
471,012 - 0.5
471,040 + 0.4
471,054 - 0.2
471,057 + 0.2
471,060 - 0.1
471,060 - 1.1
471,062 - 0.4
471,202 - -0.4
471,224 - 0.0
471,608 + 13698 mRNA_5330 0.15 -0.3
471,664 + 13698 mRNA_5330 0.18 0.0
471,793 + 13698 mRNA_5330 0.24 -0.3
472,047 + 13698 mRNA_5330 0.35 1.2
472,234 - 13698 mRNA_5330 0.44 1.0
472,823 + 13698 mRNA_5330 0.71 0.1
472,838 + 13698 mRNA_5330 0.71 0.1
473,156 - 13698 mRNA_5330 0.86 0.1
473,251 - 0.3
473,302 + -1.0
473,303 - 0.8
473,576 - 0.8
473,576 - -0.2
473,576 + 1.8
473,578 - -1.0
473,580 - 0.1
473,582 - 0.8
473,585 + 0.4
473,589 - 1.3
473,601 - -0.0
473,729 + 0.5
473,859 + 1.6
473,873 + 0.4
473,887 - 1.3
474,023 - 1.4
474,303 - 13699 mRNA_5331 0.26 -2.7
474,313 + 13699 mRNA_5331 0.27 -1.7
474,316 + 13699 mRNA_5331 0.27 0.2
474,319 + 13699 mRNA_5331 0.27 -1.3
474,407 - 13699 mRNA_5331 0.34 0.4
474,460 + 13699 mRNA_5331 0.38 0.7